{"id":13,"date":"2015-06-15T10:26:53","date_gmt":"2015-06-15T08:26:53","guid":{"rendered":"http:\/\/members.loria.fr\/thierrygartiser\/?page_id=13"},"modified":"2025-02-25T18:13:42","modified_gmt":"2025-02-25T16:13:42","slug":"publications","status":"publish","type":"page","link":"https:\/\/members.loria.fr\/MDDevignes\/publications\/","title":{"rendered":"Publis"},"content":{"rendered":"<p><!--more--><\/p>\n<h2><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=Devignes+MD+OR+Morch+MD+OR+Devignes-Morch+MD+OR+Morch-Devignes+MD\" target=\"_blank\" rel=\"noopener noreferrer\">Liste Compl\u00e8te (1979-today) via PubMed NCBI<\/a><\/h2>\n<h2>Liste Compl\u00e8te (1999-2024) retourn\u00e9e par HAL-INRIA<\/h2>\n<p>   <!DOCTYPE html PUBLIC \"-\/\/W3C\/\/DTD XHTML 1.0 Transitional\/\/EN\" \"http:\/\/www.w3.org\/TR\/xhtml1\/DTD\/xhtml1-transitional.dtd\"> <html xmlns='http:\/\/www.w3.org\/1999\/xhtml' xml:lang='fr' lang='fr'> <head> <meta name=\"robots\" content=\"noindex, nofollow\" \/> <meta http-equiv=\"content-type\" content= \"text\/html;charset=UTF-8\" \/> <meta http-equiv=\"Content-Language\" content=\"fr\" \/> <link rel=\"stylesheet\" type=\"text\/css\" href=\"..\/css\/inria.css\" \/> <link rel=\"stylesheet\" type=\"text\/css\" href=\"..\/css\/haltools.css\" \/> <link rel=\"stylesheet\" type=\"text\/css\" href=\"https:\/\/haltools.inria.fr\/\/css\/VisuCondense.css\" \/> <!-- Piwik haltools.inria.fr--> <script type=\"text\/javascript\">   var _paq = _paq || [];   _paq.push(['trackPageView']);   _paq.push(['enableLinkTracking']);   (function() {     var u=\"\/\/piwik.inria.fr\/\";     _paq.push(['setTrackerUrl', u+'piwik.php']);     _paq.push(['setSiteId', 25]);     var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0];     g.type='text\/javascript'; g.async=true; g.defer=true; g.src=u+'piwik.js'; s.parentNode.insertBefore(g,s);   })(); <\/script> <noscript><\/p>\n<p><img decoding=\"async\" src=\"\/\/piwik.inria.fr\/piwik.php?idsite=25\" style=\"border:0;\" alt=\"\" \/><\/p>\n<p><\/noscript> <!-- End Piwik Code -->  <title>Publications HAL de  Marie-Dominique,Devignes; Marie-Dominique,Morch; Marie-Dominique,Morch-Devignes; Marie-Dominique,Devignes-Morch<\/title> <\/head> <body> <\/p>\n<div id=\"res_script\">\n<div class='ZoneTitreResultat'> <span class=\"TitreResultats\">Search Results <\/span>  \t\t\t<a href=\"\/Public\/afficheRequetePubli.php?auteur_exp=Marie-Dominique%2CDevignes%3B+Marie-Dominique%2CMorch%3B+Marie-Dominique%2CMorch-Devignes%3B+Marie-Dominique%2CDevignes-Morch&#038;annee_publideb=1980&#038;annee_publifin=2024&#038;CB_auteur=oui&#038;CB_titre=oui&#038;CB_article=oui&#038;CB_typdoc=oui&#038;langue=Anglais&#038;tri_exp=annee_publi&#038;tri_exp2=typdoc&#038;tri_exp3=date_publi&#038;ordre_aff=TA&#038;Fen=Rech&#038;lang=fr&#038;Formate=Oui&#038;css=https:\/\/haltools.inria.fr\/\/css\/VisuCondense.css\" style=\"color:red;font-size:1em;font-style: italic;\"  target=\"_top\">&#8211;> Url version d&eacute;taill&eacute;e<\/a> \t\t , \t\t\t<a href=\"\/Public\/afficheRequetePubli.php?auteur_exp=Marie-Dominique%2CDevignes%3B+Marie-Dominique%2CMorch%3B+Marie-Dominique%2CMorch-Devignes%3B+Marie-Dominique%2CDevignes-Morch&#038;annee_publideb=1980&#038;annee_publifin=2024&#038;CB_auteur=oui&#038;CB_titre=oui&#038;CB_article=oui&#038;CB_typdoc=oui&#038;langue=Anglais&#038;tri_exp=annee_publi&#038;tri_exp2=typdoc&#038;tri_exp3=date_publi&#038;ordre_aff=TA&#038;Fen=Rech&#038;lang=fr&#038;Formate=Oui&#038;css=https:\/\/haltools.inria.fr\/\/css\/VisuCondense.css&amp;Formate=Oui&amp;css=..\/css\/VisuCondense.css\" style=\"color:red;font-size:1em;font-style: italic;\"  target=\"_top\">Url version format&eacute;e<\/a> \t\t <br \/><span class='SousTitreResultats'> <b>Criteria : <\/b>Author : \u00ab\u00a0Marie-Dominique,Devignes; Marie-Dominique,Morch; Marie-Dominique,Morch-Devignes; Marie-Dominique,Devignes-Morch\u00a0\u00bb, Publication year >= \u00ab\u00a01980\u00a0\u00bb to \u00ab\u00a02024\u00a0\u00bb<\/span> <br \/><span class='LibelleNbPubli'>Number of occurrences founded :<\/span> <span class='ValeurNbPubli'>149.<\/span><\/p>\n<\/div>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-04871970v1\" target=\"_blank\" >HLA-EpiCheck: novel approach for HLA B-cell epitope prediction using 3D-surface patch descriptors derived from molecular dynamic simulations<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Diego Amaya-Ramirez, Magali Devriese, Romain Lhotte, C\u00e9dric Usureau, Malika Sma\u00efl-Tabbone, Jean-Luc Taupin, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Bioinformatics Advances<\/i>, 2024, 4 (1), <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/bioadv\/vbae186\">&#x27E8;10.1093\/bioadv\/vbae186&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-04618277v1\" target=\"_blank\" >Orchestrating data flows throughout their whole life cycle<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Konogan Bourhy, Laurent Bouri, Christophe Bruley, Olivier Collin, Fr\u00e9d\u00e9ric De Lamotte, Thomas Denecker, Marie-Dominique Devignes, Jean-Fran\u00e7ois Dufayard, Alban Gaignard, Nadia Gou\u00e9, Gildas Le Corguille, Paulette Lieby, Herv\u00e9 M\u00e9nager, Imane Messak, Hamid Ouahioune, Claire Rioualen, Thomas Rosnet, Baptiste Rousseau, Julien Seiler, Jacques van Helden<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>JOBIM 2024 &#8211; Journ\u00e9es Ouvertes en Biologie, Informatique et Math\u00e9matiques<\/i>, Jun 2024, Toulouse, France. <a target=\"_blank\" href=\"https:\/\/www.inrae.fr\/evenements\/jobim-2024\"><\/a>, 2024<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-04148181v1\" target=\"_blank\" >FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Alban Gaignard, Thomas Rosnet, Fr\u00e9d\u00e9ric de Lamotte, Vincent Lefort, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Biomedical Semantics<\/i>, 2023, 14 (1), pp.7. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s13326-023-00289-5\">&#x27E8;10.1186\/s13326-023-00289-5&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-04017432v1\" target=\"_blank\" >Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Md Kamrul Islam, Diego Amaya-Ramirez, Bernard Maigret, Marie-Dominique Devignes, Sabeur Aridhi, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Scientific Reports<\/i>, 2023, 13 (1), pp.3643. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1038\/s41598-023-30095-z\">&#x27E8;10.1038\/s41598-023-30095-z&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-04210856v1\" target=\"_blank\" >CroMaSt: a workflow for assessing protein domain classification by cross-mapping of structural instances between domain databases and structural alignment<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Hrishikesh Dhondge, Isaure Chauvot de Beauch\u00eane, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Bioinformatics Advances<\/i>, 2023, 3 (1), <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/bioadv\/vbad081\">&#x27E8;10.1093\/bioadv\/vbad081&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-04234402v1\" target=\"_blank\" >Experiences with a training DSW knowledge model for early-stage researchers<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Hrishikesh Dhondge, Roswitha Dolcemascolo, Jose Gavald\u00e1-Garc\u00eda, R. Anah\u00ed Higuera-Rodriguez, Anna Kravchenko, Joel Roca Mart\u00ednez, Niki Messini, Anna P\u00e9rez-R\u00e0fols, Guillermo P\u00e9rez Ropero, Luca Sperotto, Isaure Chauvot de Beauch\u00eane, Wim Vranken<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Open Research Europe<\/i>, 2023, 3, pp.97. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.12688\/openreseurope.15609.1\">&#x27E8;10.12688\/openreseurope.15609.1&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-03915205v1\" target=\"_blank\" >Improving automatic GO annotation with semantic similarity<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Bishnu Sarker, Navya Khare, Marie-Dominique Devignes, Sabeur Aridhi<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>BMC Bioinformatics<\/i>, 2022, 23 (S2), pp.433. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s12859-022-04958-7\">&#x27E8;10.1186\/s12859-022-04958-7&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-03805671v1\" target=\"_blank\" >Inductive database to support iterative data mining: Application to biomarker analysis on patient data in the Fight-HF project<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Emmanuel Bresso, Joao-Pedro Ferreira, Nicolas Girerd, Masatake Kobayashi, Gr\u00e9goire Preud\u2019homme, Patrick Rossignol, Faiez Zannad, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Biomedical Informatics<\/i>, 2022, 135, pp.104212. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/j.jbi.2022.104212\">&#x27E8;10.1016\/j.jbi.2022.104212&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-03708020v1\" target=\"_blank\" >Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Aria Gheeraert, Laurent Vuillon, Laurent Chaloin, Olivier Moncorg\u00e9, Thibaut Very, Serge Perez, Vincent Leroux, Isaure Chauvot de Beauch\u00eane, Dominique Mias-Lucquin, Marie-Dominique Devignes, Ivan Rivalta, Bernard Maigret<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Chemical Information and Modeling<\/i>, 2022, 62 (12), pp.3107-3122. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1021\/acs.jcim.2c00350\">&#x27E8;10.1021\/acs.jcim.2c00350&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-03183755v2\" target=\"_blank\" >Steps Towards Causal Formal Concept Analysis<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Alexandre Bazin, Miguel Couceiro, Marie-Dominique Devignes, Amedeo Napoli<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Journal of Approximate Reasoning<\/i>, 2022, 142, pp.338-348. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/j.ijar.2021.12.007\">&#x27E8;10.1016\/j.ijar.2021.12.007&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-03540409v1\" target=\"_blank\" >On the design of a similarity function for sparse binary data with application on protein function annotation<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marcelo Veras, Bishnu Sarker, Sabeur Aridhi, Jo\u00e3o Gomes, Jos\u00e9 Mac\u00eado, Engelbert Mephu Nguifo, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Knowledge-Based Systems<\/i>, 2022, 238, pp.107863. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/j.knosys.2021.107863\">&#x27E8;10.1016\/j.knosys.2021.107863&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-04036886v1\" target=\"_blank\" >A Semi-supervised Graph Deep Neural Network for\u00a0Automatic Protein Function Annotation<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Akrem Sellami, Bishnu Sarker, Salvatore Tabbone, Marie-Dominique Devignes, Sabeur Aridhi<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>9th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO)<\/i>, Jun 2022, Gran Canaria, Spain. pp.153-166, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-031-07802-6_14\">&#x27E8;10.1007\/978-3-031-07802-6_14&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-03789541v1\" target=\"_blank\" >CroMaSt: A workflow for domain family curation through cross-mapping of structural instances between protein domain databases<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Hrishikesh Dhondge, Isaure Chauvot de Beauch\u00eane, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ECCB2022- 21st European Conference on Computational Biology<\/i>, Sep 2022, Sitges, Spain. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.48546\/WORKFLOWHUB.WORKFLOW.390.1\">&#x27E8;10.48546\/WORKFLOWHUB.WORKFLOW.390.1&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-03924018v1\" target=\"_blank\" >Reduced structural flexibility of eplet amino acids in HLA proteins<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Diego Amaya-Ramirez, Romain Lhotte, Magali Devriese, Constantin Hays, Jean-Luc Taupin, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ECCB 2022 21st European Conference on Computational Biology Planetary Health and Biodiversity<\/i>, Sep 2022, Barcelona, Spain<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-03807367v1\" target=\"_blank\" >FAIR-Checker : Checking and Inspecting metadata for FAIR bioinformatics resources<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Thomas Rosnet, F de Lamotte, Marie-Dominique Devignes, Vincent Lefort, A Gaignard<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Elixir AllHands 2022<\/i>, Jun 2022, Amsterdam, Netherlands<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-03357064v1\" target=\"_blank\" >Machine Learning-Derived Echocardiographic Phenotypes Predict\u00a0Heart\u00a0Failure Incidence in Asymptomatic Individuals<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Masatake Kobayashi, Olivier Huttin, Martin Magnusson, Jo\u00e3o Pedro Ferreira, Erwan Bozec, Anne-Cecile Huby, Gregoire Preud&rsquo;Homme, Kevin Duarte, Zohra Lamiral, Kevin Dalleau, Emmanuel Bresso, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes, Peter M Nilsson, Margret Leosdottir, Jean-Marc Boivin, Faiez Zannad, Patrick Rossignol, Nicolas Girerd<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>JACC: Cardiovascular Imaging<\/i>, 2021, S1936-878X (21), pp.00556-8. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/j.jcmg.2021.07.004\">&#x27E8;10.1016\/j.jcmg.2021.07.004&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-03165272v1\" target=\"_blank\" >Head-to-head comparison of clustering methods for heterogeneous data: a simulation-driven benchmark<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gregoire Preud&rsquo;Homme, K\u00e9vin Duarte, Kevin Dalleau, Claire Lacomblez, Emmanuel Bresso, Malika Sma\u00efl-Tabbone, Miguel Couceiro, Marie-Dominique Devignes, Masatake Kobayashi, Olivier Huttin, Jo\u00e3o Pedro Ferreira, Faiez Zannad, Patrick Rossignol, Nicolas Girerd<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Scientific Reports<\/i>, 2021, 11 (1), pp.4202. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1038\/s41598-021-83340-8\">&#x27E8;10.1038\/s41598-021-83340-8&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-03435140v1\" target=\"_blank\" >PPIDomainMiner: Inferring domain-domain interactions from multiple sources of proteinprotein interactions<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Amina Ahmed Nacer, Hiba Najjar, David Ritchie, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>PLoS Computational Biology<\/i>, 2021, 17 (8), pp.e1008844. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1371\/journal.pcbi.1008844\">&#x27E8;10.1371\/journal.pcbi.1008844&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-03173406v2\" target=\"_blank\" >A Hybrid Approach to Identifying the Most Predictive and Discriminant Features in Supervised Classification Problems<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Alexandre Bazin, Miguel Couceiro, Marie-Dominique Devignes, Amedeo Napoli<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ICCS 2021 &#8211; 26th International Conference on Conceptual Structures<\/i>, Sep 2021, Virtual, France. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-030-86982-3_4\">&#x27E8;10.1007\/978-3-030-86982-3_4&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-03541255v1\" target=\"_blank\" >Prot-A-GAN: Automatic Protein Function Annotation using GAN-inspired Knowledge Graph Embedding<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Bishnu Sarker, Marie-Dominique Devignes, Guy Wolf, Sabeur Aridhi<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ICML 2021 &#8211; Workshop on Computational Biology<\/i>, Jul 2021, Virtual, United States<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-04578212v1\" target=\"_blank\" >Leveraging Zernike polynomials for peptide conformer identification<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Diego Amaya-Ramirez, Bernard Maigret, Etienne Corman, Jean-Luc Taupin, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>GGMM SFCi<\/i>, Sep 2021, Villeneuve d&rsquo;Ascq, France. <a target=\"_blank\" href=\"https:\/\/ggmm-sfci-lille.com\/\"><\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-03784168v1\" target=\"_blank\" >Data-driven identification of structural patterns associated with RNA binding in RNA Recognition Motif domains<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Hrishikesh Dhondge, Mart\u00ednez Joel Roca, Vranken Wim, Marie-Dominique Devignes, Isaure Chauvot de Beauch\u00eane<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Student Council Symposium (SCS) 2021<\/i>, Jul 2021, Virtual, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-02928742v1\" target=\"_blank\" >Sex differences in circulating proteins in heart failure with preserved ejection fraction<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Susan Stienen, Joao Pedro Ferreira, Masatake Kobayashi, Gregoire Preud\u2019homme, Daniela Dobre, Jean-Loup Machu, K\u00e9vin Duarte, Emmanuel Bresso, Marie-Dominique Devignes, Natalia L\u00f3pez Andr\u00e9s, Nicolas Girerd, Svend Aakhus, Giuseppe Ambrosio, Hans-Peter Brunner-La Rocca, Ricardo Fontes-Carvalho, Alan Fraser, Loek van Heerebeek, Gilles de Keulenaer, Paolo Marino, Kenneth Mcdonald, Alexandre Mebazaa, Zolt\u00e0n Papp, Riccardo Raddino, Carsten Tsch\u00f6pe, Walter Paulus, Faiez Zannad, Patrick Rossignol<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Biology of Sex Differences<\/i>, 2020, 11 (1), pp.47. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s13293-020-00322-7\">&#x27E8;10.1186\/s13293-020-00322-7&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-02917113v1\" target=\"_blank\" >Circulating plasma proteins and new-onset diabetes in a population-based study: proteomic and genomic insights from the STANISLAS cohort<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Joao Pedro Ferreira, Zohra Lamiral, Constance Xhaard, K\u00e9vin Duarte, Emmanuel Bresso, Marie-Dominique Devignes, Edith Le Floch, Claire Dandine Roulland, Jean-Fran\u00e7ois Deleuze, Sandra Wagner, Bruno Guerci, Nicolas Girerd, Faiez Zannad, Jean-Marc Boivin, Patrick Rossignol<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>European Journal of Endocrinology<\/i>, 2020, 183 (3), pp.285-295. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1530\/EJE-20-0246\">&#x27E8;10.1530\/EJE-20-0246&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-02732968v1\" target=\"_blank\" >Enhanced clinical phenotyping by mechanistic bioprofiling in heart failure with preserved ejection fraction: insights from the MEDIA-DHF study (The Metabolic Road to Diastolic Heart Failure)<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Susan Stienen, Joao Pedro Ferreira, Masatake Kobayashi, Gregoire Preud&rsquo;Homme, Daniela Dobre, Jean-Loup Machu, K\u00e9vin Duarte, Emmanuel Bresso, Marie-Dominique Devignes, Natalia L\u00f3pez Andr\u00e9s, Nicolas Girerd, Svend Aakhus, Giuseppe Ambrosio, Hans-Peter Brunner-La Rocca, Ricardo Fontes-Carvalho, Alan G Fraser, Loek van Heerebeek, Stephane Heymans, Gilles de Keulenaer, Paolo Marino, Kenneth Mcdonald, Alexandre Mebazaa, Zolt\u00e0n Papp, Riccardo Raddino, Carsten Tsch\u00f6pe, Walter Paulus, Faiez Zannad, Patrick Rossignol<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Biomarkers<\/i>, 2020, 25 (2), pp.201-211. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1080\/1354750X.2020.1727015\">&#x27E8;10.1080\/1354750X.2020.1727015&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-02517502v1\" target=\"_blank\" >Insulin-like growth factor binding protein 2: A prognostic biomarker for heart failure hardly redundant with natriuretic peptides<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nicolas Girerd, Emmanuel Bresso, Marie-Dominique Devignes, Patrick Rossignol<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Journal of Cardiology<\/i>, 2020, 300, pp.252-254. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/j.ijcard.2019.11.100\">&#x27E8;10.1016\/j.ijcard.2019.11.100&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02547607v1\" target=\"_blank\" >PGxCorpus, a manually annotated corpus for pharmacogenomics<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Jo\u00ebl Legrand, Romain Gogdemir, Cedric Bousquet, Kevin Dalleau, Marie-Dominique Devignes, William Digan, Chia-Ju Lee, Ndeye-Coumba Ndiaye, Nadine Petitpain, Patrice Ringot, Malika Sma\u00efl-Tabbone, Yannick Toussaint, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Scientific Data <\/i>, 2020, 7, pp.3. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1038\/s41597-019-0342-9\">&#x27E8;10.1038\/s41597-019-0342-9&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02393130v1\" target=\"_blank\" >Application of Artificial Intelligence to Gastroenterology and Hepatology<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Catherine Le Berre, William J. Sandborn, Sabeur Aridhi, Marie-Dominique Devignes, Laure Fournier, Malika Smail-Tabbone, Silvio Danese, Laurent Peyrin-Biroulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Gastroenterology<\/i>, 2020, 158 (1), pp.76-94.e2. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1053\/j.gastro.2019.08.058\">&#x27E8;10.1053\/j.gastro.2019.08.058&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02138814v1\" target=\"_blank\" >Plasma protein biomarkers and their association with mutually exclusive cardiovascular phenotypes: the FIBRO\u2011TARGETS case\u2013control analyses<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Joao Pedro Ferreira, Anne Pizard, Jean-Loup Machu, Emmanuel Bresso, Hans-Peter Brunner-Larocca, Nicolas Girerd, C\u00e9line Leroy, Arantxa Gonz\u00e1lez, Javier D\u00edez, Stephane Heymans, Marie-Dominique Devignes, Patrick Rossignol, Faiez Zannad<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Clinical Research in Cardiology<\/i>, 2020, 109 (1), pp.22-33. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/s00392-019-01480-4\">&#x27E8;10.1007\/s00392-019-01480-4&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-02909383v2\" target=\"_blank\" >Explaining Multicriteria Decision Making with Formal Concept Analysis<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Alexandre Bazin, Miguel Couceiro, Marie-Dominique Devignes, Amedeo Napoli<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Concept Lattices and Applications 2020<\/i>, Jun 2020, Tallinn, Estonia<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-03025827v1\" target=\"_blank\" >Graph Based Automatic Protein Function Annotation Improved by Semantic Similarity<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Bishnu Sarker, Navya Khare, Marie-Dominique Devignes, Sabeur Aridhi<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>IWBBIO 2020 &#8211; 8th International Work-Conference on Bioinformatics and Biomedical Engineering<\/i>, May 2020, GRANADA, Spain. pp.261-272, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-030-45385-5_24\">&#x27E8;10.1007\/978-3-030-45385-5_24&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02138843v1\" target=\"_blank\" >Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nicolas Soler, Emilie Robert, Isaure Chauvot de Beauch\u00eane, Philippe Monteiro, Virginie Libante, Bernard Maigret, Johan Staub, David W. Ritchie, G\u00e9rard Gu\u00e9don, Sophie Payot, Marie-Dominique Devignes, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Mobile DNA<\/i>, 2019, 10 (1), pp.1-16. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s13100-019-0160-9\">&#x27E8;10.1186\/s13100-019-0160-9&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02393202v1\" target=\"_blank\" >The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Kacsoh, Alex Crocker, Kimberley Lewis, George Georghiou, Huy Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet Rifaioglu, Alperen Dalkiran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca Hurto, Peter Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, Jose Fernandez, Branislava Gemovic, Vladimir Perovic, Radoslav Davidovi\u0107, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C Mchardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex Freitas, Magdalena Antczak, Fabio Fabris, Mark Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri T\u00f6r\u00f6nen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel S. Roche, Jonas Reeb, David Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijevi\u0107, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage Black, Dane Jo, Erica Suh, Jonathan Dayton, Dallas Larsen, Ashton Omdahl, Liam Mcguffin, Danielle Brackenridge, Patricia Babbitt, Jeffrey Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Bj\u00f6rne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav \u0160muc, Adrian M Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven Brenner, Christine Orengo, Constance Jeffery, Giovanni Bosco, Deborah Hogan, Maria Martin, Claire O\u2019donovan, Sean Mooney, Casey Greene, Predrag Radivojac, Iddo Friedberg<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Genome Biology<\/i>, 2019, 20 (1), <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s13059-019-1835-8\">&#x27E8;10.1186\/s13059-019-1835-8&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02320974v1\" target=\"_blank\" >Blind prediction of homo\u2010 and hetero\u2010 protein complexes: The CASP13\u2010CAPRI experiment<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marc Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Rapha\u00ebl A.G. Chaleil, Tereza Gerguri, Paul Bates, Elodie Laine, Alessandra Carbone, Sergei Grudinin, Ren Kong, Ran\u2010ran Liu, Xi\u2010ming Xu, Hang Shi, Shan Chang, Miriam Eisenstein, Agnieszka Karczynska, Cezary Czaplewski, Emilia Lubecka, Agnieszka Lipska, Pawe\u0142 Krupa, Magdalena Mozolewska, \u0141ukasz Golon, Sergey Samsonov, Adam Liwo, Silvia Crivelli, Guillaume Pag\u00e8s, Mikhail Karasikov, Maria Kadukova, Yumeng Yan, Sheng\u2010you Huang, Mireia Rosell, Luis Angel Rodr\u00edguez\u2010lumbreras, Miguel Romero\u2010durana, Luc\u00eda D\u00edaz\u2010bueno, Juan Fernandez\u2010recio, Charles Christoffer, Genki Terashi, Woong\u2010hee Shin, Tunde Aderinwale, Sai Raghavendra Maddhuri Venkata Subram, Daisuke Kihara, Dima Kozakov, Sandor Vajda, Kathyn Porter, Dzmitry Padhorny, Israel Desta, Dmitri Beglov, Mikhail Ignatov, Sergey Kotelnikov, Iain Moal, David Ritchie, Isaure Chauvot de Beauch\u00eane, Bernard Maigret, Marie-Dominique Devignes, Maria Elisa Ruiz Echartea, Didier Barradas\u2010bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yue Cao, Yang Shen, Minkyung Baek, Taeyong Park, Hyeonuk Woo, Chaok Seok, Merav Braitbard, Lirane Bitton, Dina Scheidman\u2010duhovny, Justas Dapk\u016bnas, Kliment Olechnovi\u010d, \u010ceslovas Venclovas, Petras J. Kundrotas, Saveliy Belkin, Devlina Chakravarty, Varsha Badal, Ilya A. Vakser, Thom Vreven, Sweta Vangaveti, Tyler M. Borrman, Zhiping Weng, Johnathan D Guest, Ragul Gowthaman, Brian G Pierce, Xianjin Xu, Rui Duan, Liming Qiu, Jie Hou, Benjamin Ryan Merideth, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Panos Koukos, Jorge Roel\u2010touris, Francesco Ambrosetti, Cunliang Geng, J\u00f6rg Schaarschmidt, Mikael Trellet, Adrien S.J. Melquiond, Li Xue, Brian Jim\u00e9nez\u2010garc\u00eda, Charlotte Noort, Rodrigo Honorato, Alexandre M.J.J. Bonvin, Shoshana J. Wodak<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Proteins &#8211; Structure, Function and Bioinformatics<\/i>, 2019, 87 (12), pp.1200-1221. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1002\/prot.25838\">&#x27E8;10.1002\/prot.25838&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-02395258v1\" target=\"_blank\" >Extended persistence of antiphospholipid antibodies beyond the twelve\u2010week time interval: Association with baseline antiphospholipid antibodies titres<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Jean Devignes, Malika Sma\u00efl-Tabbone, Alex Herv\u00e9, Geoffroy Cagninacci, Marie-Dominique Devignes, Thomas Lecompte, St\u00e9phane Zuily, Denis Wahl<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Journal of Laboratory Hematology<\/i>, 2019, 41 (6), pp.726-730. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1111\/ijlh.13094\">&#x27E8;10.1111\/ijlh.13094&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02974531v1\" target=\"_blank\" >The ICE\/IME Finder approach and its application to ICE\/IME annotation in Streptococcus.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Charles Coluzzi, Julie Lao, G\u00e9rard Gu\u00e9don, Marie-Dominique Devignes, Chlo\u00e9 Ambroset, Thomas Lacroix, Helene Chiapello, Sophie Payot, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>8th symposium on Antimicrobial Resistance in Animal and Environment<\/i>, Jul 2019, Tours, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02974525v1\" target=\"_blank\" >The ICE\/IME Finder approach and its application to ICE\/IME annotation in Streptococcus<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Charles Coluzzi, Julie Lao, G\u00e9rard Gu\u00e9don, Marie-Dominique Devignes, Chlo\u00e9 Ambroset, Thomas Lacroix, Helene Chiapello, Sophie Payot, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>4th International Workshop on Streptococcus suis<\/i>, Jun 2019, Montr\u00e9al, Canada. <a target=\"_blank\" href=\"http:\/\/aviaquebec.ca\/wp\/wp-content\/uploads\/2019-FINAL-PROGRAM_4th-IWSs_without-sponsors_short-version.pdf\"><\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01777508v1\" target=\"_blank\" >Computational Discovery of Direct Associations between GO terms and Protein Domains<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, David Ritchie, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>BMC Bioinformatics<\/i>, 2018, 19 (Suppl 14), pp.413. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s12859-018-2380-2\">&#x27E8;10.1186\/s12859-018-2380-2&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01925471v1\" target=\"_blank\" >Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Philippe Jonveaux, C\u00e9line Bonnet, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018)<\/i>, Dec 2018, Antwerp, Belgium<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01906547v1\" target=\"_blank\" >First steps toward finding relevant pathology-gene pairs using analogy<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Yohann Fransot, Yves Lepage, Jean Lieber, Emmanuel Nauer, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>EvoCBR 2018 : Workshop on Evolutionary Computation and CBR at the International Conference on Case-Based Reasoning (ICCBR 2018)<\/i>, Jul 2018, Stockholm, Sweden<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01872312v1\" target=\"_blank\" >D\u00e9couverte d&rsquo;associations entre Ev\u00e9nements Ind\u00e9sirables M\u00e9dicamenteux par les structures de patrons et les ontologies<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journ\u00e9e I.A. et Sant\u00e9<\/i>, Jul 2018, Nancy, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01877112v1\" target=\"_blank\" >PPI DomainMiner: predicting domain-domain interactions from protein-protein interactions using tripartite graph modeling and vector similarity<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Sabeur Aridhi, Dave Ritchie, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ECCB 2018 &#8211; 17th European Conference on Computational Biology<\/i>, Sep 2018, Ath\u00e8nes, Greece<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01928421v1\" target=\"_blank\" >A data science approach for exploring differential expression profiles of genes in transcriptomic studies-Application to the understanding of ageing in obese and lean rats in the FIGHT-HF project<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Emmanuel Bresso, Claire Lacomblez, Anne Pizard, Patrick Rossignol, Faiez Zannad, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>JOBIM 2018 &#8211; Journ\u00e9es Ouvertes Biologie, Informatique et Math\u00e9matiques<\/i>, Jul 2018, Marseille, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01466842v1\" target=\"_blank\" >ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David W. Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>BMC Bioinformatics<\/i>, 2017, 18 (1), pp.107. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s12859-017-1519-x\">&#x27E8;10.1186\/s12859-017-1519-x&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01609240v1\" target=\"_blank\" >Low-dose alkylphenol exposure promotes mammary epithelium alterations and transgenerational developmental defects, but does not enhance tumorigenic behaviour of breast cancer cells<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard-Jovenin, Charl\u00e8ne Thi\u00e9baut, Amand Chesnel, Emmanuel Bresso, Chlo\u00e9 Morel, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes, Taha Boukhobza, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Frontiers in Endocrinology<\/i>, 2017, 8, pp.272. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.3389\/fendo.2017.00272\">&#x27E8;10.3389\/fendo.2017.00272&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01580789v1\" target=\"_blank\" >A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Charles Coluzzi, G\u00e9rard Gu\u00e9don, Marie-Dominique Devignes, Chlo\u00e9 C. Ambroset, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Frontiers in Microbiology<\/i>, 2017, 8, pp.16. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.3389\/fmicb.2017.00443\">&#x27E8;10.3389\/fmicb.2017.00443&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01388654v1\" target=\"_blank\" >Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marwa El Houasli, Bernard Maigret, Marie-Dominique Devignes, Anisah W Ghoorah, Sergei Grudinin, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Proteins: Structure, Function, and Genetics<\/i>, 2017, Special Issue: Sixth Meeting on the Critical Assessment of Predicted Interactions 85 (3), pp.463-469. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1002\/prot.25182\">&#x27E8;10.1002\/prot.25182&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01576341v1\" target=\"_blank\" >Discovering associations between adverse drug events using pattern structures and ontologies<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Biomedical Semantics<\/i>, 2017, 93, pp.539 &#8211; 546. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/s13326-017-0137-x\">&#x27E8;10.1186\/s13326-017-0137-x&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-02994505v1\" target=\"_blank\" >Validation de ER$\\alpha comme marqueur pr\u00e9dictif de susceptibilit\u00e9 aux nonylph\u00e9nols in vivo et in vitro<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard-Jovenin, Charl\u00e8ne Thi\u00e9baut, Amand Chesnel, Emmanuel Bresso, Chlo\u00e9 Morel, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes, Taha Boukhobza, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journe\u0301e PNR-EST de l\u2019ANSES<\/i>, Oct 2017, Paris, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01573070v1\" target=\"_blank\" >Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Sabeur Aridhi, Marie-Dominique Devignes, Rabie Saidi, Alexandre Renaux, Maria-Jesus Martin, David W. Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Function-SIG ISMB\/ECCB 2017<\/i>, biofunctionprediction.org, Jul 2017, Prague, Czech Republic<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01531204v1\" target=\"_blank\" >Associating Gene Ontology Terms with Pfam Protein Domains<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>5th International Work-Conference on Bioinformatics and Biomedical Engineering &#8211; IWBBIO 2017<\/i>, Apr 2017, Granada, Spain. pp.127-138, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-319-56154-7_13\">&#x27E8;10.1007\/978-3-319-56154-7_13&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01573079v1\" target=\"_blank\" >Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Sabeur Aridhi, Rabie Saidi, Alexandre Renaux, Maria J. Martin, David W. Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Function-SIG ISMB\/ECCB 2017<\/i>, Jul 2017, Prague, Czech Republic. 2017<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01573381v1\" target=\"_blank\" >Neighborhood-Based Label Propagation in Large Protein Graphs<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Sabeur Aridhi, Seyed Ziaeddin Alborzi, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Function SIG @ ISMB\/ECCB 2017<\/i>, Jul 2017, Prague, Czech Republic. pp.2<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01309105v1\" target=\"_blank\" >Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marc F. Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovy, Andrej Sali, Joan Segura, Narcis Fernandez-Fuentes, Shruthi Viswanath, Ron Elber, Sergei Grudinin, Petr Popov, Emilie Neveu, Hasup Lee, Minkyung Baek, Sangwoo Park, Lim Heo, Gyu Rie Lee, Chaok Seok, Sanbo Qin, Huan-Xiang Zhou, David W. Ritchie, Bernard Maigret, Marie-Dominique Devignes, Anisah Ghoorah, Mieczyslaw Torchala, Rapha\u00ebl A.G. Chaleil, Paul A Bates, Efrat Ben-Zeev, Miriam Eisenstein, Surendra Negi S., Thom Vreven, Brian G Pierce, Tyler M. Borrman, Jinchao Yu, Fran\u00e7oise Ochsenbein, Zhiping Weng, Rapha\u00ebl Gu\u00e9rois, Anna Vangone, Jo\u00e3o P.G.L.M. Rodrigues, Gydo van Zundert, Mehdi Nellen, Li Xue, Ezgi Karaca, Adrien S. J. Melquiond, Koen Visscher, Panagiotis L Kastritis, Alexandre M. J. J. Bonvin, Xianjin Xu, Liming Qiu, Chengfei Yan, Jilong Li, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Yang Sheng, Lenna X. Peterson, Hyung-Rae Kim, Amit Roy, Xusi Han, Juan Esquivel-Rodr\u00edguez, Daisuke Kihara, Xiaofeng Yu, Neil J. Bruce, Jonathan C. Fuller, Rebbecca C. Wade, Ivan Anishchenko, Petras J. Kundrotas, Ilya A. Vakser, Kenichiro Imai, Kazunori Yamada, Toshiyuki Oda, Tsukasa Nakamura, Kentaro Tomii, Chiara Pallara, Miguel Romero-Durana, Brian Jim\u00e9nez-Garc\u00eda, Iain H Moal, Juan Fern\u00e1ndez-Recio, Jong Young Joung, Jong Yun Kim, Keehyoung Joo, Jooyoung Lee, Dima Kozakov, Sandor Vajda, Scott Mottarella, David R. Hall, Dmitri Beglov, Artem Mamonov, Bing Xia, Tanggis Bohnuud, Carlos A. del Carpio, Eichiro Ichiishi, Nicholas Marze, Daisuke Kuroda, Shourya S. Roy Burman, Jeffrey J Gray, Edrisse Chermak, Luigi Cavallo, Romina Oliva, Andrey Tovchigrechko, Shoshana J Wodak<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Proteins &#8211; Structure, Function and Bioinformatics<\/i>, 2016, Special Issue: Eleventh Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, 84 (S1), pp.323-348. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1002\/prot.25007\">&#x27E8;10.1002\/prot.25007&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01258117v1\" target=\"_blank\" >Kbdock &#8211; Searching and organising the structural space of protein-protein interactions<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ERCIM News<\/i>, 2016, 104, pp.24-25<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01262284v1\" target=\"_blank\" >New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Chlo\u00e9 C. Ambroset, Charles Coluzzi, G\u00e9rard Gu\u00e9don, Marie-Dominique Devignes, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Frontiers in Microbiology<\/i>, 2016, 6 (6), pp.1483. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.3389\/fmicb.2015.01483\">&#x27E8;10.3389\/fmicb.2015.01483&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02974522v1\" target=\"_blank\" >Characterization of the ICESt3 relaxase active site indicates evolutionary relationship between MOBT relaxases and rolling circle replication proteins of the Rep-trans family.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nicolas Soler, Philippe Monteiro, Emilie Robert, Marie-Dominique Devignes, Bernard Maigret, Dave Ritchie, G\u00e9rard Gu\u00e9don, Sophie Payot, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Type IV Secretion in Gram-Negative and Gram-Positive Bacteria conference<\/i>, Dec 2016, Beilngries, Germany<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01416469v1\" target=\"_blank\" >Transgenerational effects of ERalpha36 over-expression on mammary gland development and molecular phenotype: clinical perspective for breast cancer risk and therapy.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard-Jovenin, Amand Chesnel, Emmanuel Bresso, Chlo\u00e9 Morel, Charl\u00e8ne Thi\u00e9baut, Malika Smail-Tabbone, El-Hadi Djermoune, Marie-Dominique Devignes, Taha Boukhobza, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>21st World Congress on Advances in Oncology and 19th International Symposium on Molecular Medicine<\/i>, Oct 2016, Athens, Greece<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01369448v1\" target=\"_blank\" >Discovering ADE associations from EHRs using pattern structures and ontologies<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Phenotype Day, Bio-Ontologies SIG, ISMB<\/i>, Jul 2016, Orlando, United States<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01399232v1\" target=\"_blank\" >Using aggregation functions on structured data: a use case in the FIGHT-HF project<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Kevin Dalleau, Miguel Couceiro, Marie-Dominique Devignes, Chedy Ra\u00efssi, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Symposium on Aggregation and Structures (ISAS 2016) <\/i>, Jul 2016, Luxembourg, Luxembourg<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01391172v1\" target=\"_blank\" >Extraction d&rsquo;association d&rsquo;EIM \u00e0 partir de dossiers patients : exp\u00e9rimentation avec les structures de patrons et les ontologies<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Deuxi\u00e8me Atelier sur l&rsquo;Intelligence Artificielle et la Sant\u00e9<\/i>, Jun 2016, Montpellier, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01320688v1\" target=\"_blank\" >Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ER\u03b136-mediated mechanism<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard-Jovenin, Amand Chesnel, Chlo\u00e9 Morel, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Taha Boukhobza, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>2nd French Workshop on Endocrine disruption in wildlife and human health<\/i>, Jan 2016, Paris, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01317448v1\" target=\"_blank\" >Classification and Exploration of 3D Protein Domain Interactions Using Kbdock<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Anisah W Ghoorah, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\">O. Carugo; F. Eisenhaber. <i>Data Mining Techniques for the Life Sciences<\/i>, 1415, Springer Science+Business Media New York, pp.91-105, 2016, Methods in Molecular Biology, 978-1-4939-3570-3. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-1-4939-3572-7_5\">&#x27E8;10.1007\/978-1-4939-3572-7_5&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Book sections<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01573093v1\" target=\"_blank\" >Using Content-Based Filtering to Infer Direct Associations between the CATH, Pfam, and SCOP Domain Databases<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, David W. Ritchie, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ECCB 2016<\/i>, Sep 2016, The Hague, Netherlands<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02974398v1\" target=\"_blank\" >A glimpse into an unexplored world: very high diversity of integrative and mobilizable elements in Streptococci<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Charles Coluzzi, G\u00e9rard Gu\u00e9don, Chlo\u00e9 Ambroset, Marie-Dominique Devignes, Sophie Payot, Nathalie N. Leblond-Bourget<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>8th ASM conference on Streptococcal Genetics<\/i>, Jul 2016, Washington, United States<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01216748v1\" target=\"_blank\" >A Structure-Based Classification and Analysis of Protein Domain Family Binding Sites and Their Interactions<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Anisah Ghoorah, Marie-Dominique Devignes, Seyed Ziaeddin Alborzi, Malika Sma\u00efl-Tabbone, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Biology<\/i>, 2015, 4 (2), pp.327-343. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.3390\/biology4020327\">&#x27E8;10.3390\/biology4020327&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01320740v1\" target=\"_blank\" >Long chain alkyphenol mixture promotes breast cancer initiation and progression through an ER$\\alpha-mediated mechanism<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard-Jovenin, Amand Chesnel, Chlo\u00e9 Morel, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Taha Boukobza, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>2nd International Symposium of the Cancer Research Center of Lyon<\/i>, Sep 2015, Lyon, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01216743v1\" target=\"_blank\" >EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>JOBIM 2015<\/i>, Jul 2015, Clermont-Ferrand, France. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1101\/022343\">&#x27E8;10.1101\/022343&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01320699v1\" target=\"_blank\" >Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ER36-mediated mechanism<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard-Jovenin, Amand Chesnel, Chlo\u00e9 Morel, Emmanuel Bresso, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Taha Boukobza, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>4\u00e8me Colloque Inter-R\u00e9gional Grand-Est de Recherche Translationnelle en Oncologie, Oncotrans 2015<\/i>, Jun 2015, Dijon, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01097339v1\" target=\"_blank\" >ECCB 2014: The 13th European Conference on Computational Biology<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Yves Moreau<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Bioinformatics<\/i>, 2014, 30 (17), pp.4. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/bioinformatics\/btu512\">&#x27E8;10.1093\/bioinformatics\/btu512&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01090619v1\" target=\"_blank\" >Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Thibault Caradec, Maude Pupin, Aur\u00e9lien Vanvlassenbroeck, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Philippe Jacques, Val\u00e9rie Lecl\u00e8re<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>PLoS ONE<\/i>, 2014, 9 (1), pp.e85667. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1371\/journal.pone.0085667\">&#x27E8;10.1371\/journal.pone.0085667&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00920612v1\" target=\"_blank\" >KBDOCK 2013: A spatial classification of 3D protein domain family interactions<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Anisah Ghoorah, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Nucleic Acids Research<\/i>, 2014, 42 (D1), pp.389-395. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/nar\/gkt1199\">&#x27E8;10.1093\/nar\/gkt1199&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01095763v1\" target=\"_blank\" >Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an ERalpha36-mediated mechanism.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard, Emmanuel Bresso, Taha Boukobza, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Amand Chesnel, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>8e Forum du Cancerop\u00f4le Grand Est<\/i>, Nov 2014, Strasbourg, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01095597v1\" target=\"_blank\" >ILP for Mining Linked Open Data: a biomedical Case Study<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Simon Daget, C\u00e9line Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>The 24th International Conference on Inductive Logic Programming (ILP 2014)<\/i>, Sep 2014, Nancy, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01095591v1\" target=\"_blank\" >Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Simon Daget, C\u00e9line Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Data Integration in the Life Sciences &#8211; 10th International Conference, DILS 2014<\/i>, Jul 2014, Lisbon, Portugal. pp.16 &#8211; 31, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-319-08590-6_2\">&#x27E8;10.1007\/978-3-319-08590-6_2&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-01095429v1\" target=\"_blank\" >Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an estrogen receptor alpha 36 mediated mechanism<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Cl\u00e9mence Chamard, Emmanuel Bresso, Taha Boukhobza, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Amand Chesnel, H\u00e9l\u00e8ne Dumond<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>23rd Biennial Congress of the European Association for Cancer Research, EACR-23<\/i>, Jul 2014, Munich, Germany. pp.S118, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/S0959-8049(14)50435-2\">&#x27E8;10.1016\/S0959-8049(14)50435-2&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01092800v1\" target=\"_blank\" >Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gabin Personeni, Simon Daget, C\u00e9line Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Adrien Coulet<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>ECCB&rsquo;14 (European Conference on Computational Biology 2014)<\/i>, Sep 2014, Strasbourg, France. <a target=\"_blank\" href=\"http:\/\/www.eccb14.org\/\"><\/a>, 2014<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Poster communications<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-01097346v1\" target=\"_blank\" >Proceedings of ECCB 2014: The 13th European Conference on Computational Biology<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>The 13th European Conference on Computational Biology<\/i>, Sep 2014, Strasbourg, France. 30 (17), Oxford University Press, 2014, Bioinformatics<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Proceedings<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.univ-lorraine.fr\/hal-01701919v1\" target=\"_blank\" >Extended spectrum of MBD5 mutations in neurodevelopmental disorders<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">C\u00e9line Bonnet, Asma Ali Khan, Emmanuel Bresso, Charl\u00e8ne Vigouroux, Myl\u00e8ne B\u00e9ri, Sarah Lejczak, B\u00e9n\u00e9dicte Deemer, Joris Andrieux, Christophe Philippe, Anne Moncla, Irina Giurgea, Marie-Dominique Devignes, Bruno Leheup, Philippe Jonveaux<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>European Journal of Human Genetics<\/i>, 2013, 21 (12), pp.1457 &#8211; 1461. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1038\/ejhg.2013.22\">&#x27E8;10.1038\/ejhg.2013.22&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00880341v1\" target=\"_blank\" >Protein Docking Using Case-Based Reasoning<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Anisah Ghoorah, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Proteins &#8211; Structure, Function and Bioinformatics<\/i>, 2013, 81 (12), pp.2150-2158. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1002\/prot.24433\">&#x27E8;10.1002\/prot.24433&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00843914v1\" target=\"_blank\" >Integrative relational machine-learning for understanding drug side-effect profiles<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud-Sinan Karaboga, Michel Souchet, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>BMC Bioinformatics<\/i>, 2013, 14 (1), pp.207. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/1471-2105-14-207\">&#x27E8;10.1186\/1471-2105-14-207&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00920700v1\" target=\"_blank\" >Clustering optimal de g\u00e8nes fond\u00e9 sur une mesure de similarit\u00e9 s\u00e9mantique<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Rachid Hafiane, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes, Salvatore Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>10\u00e8me \u00e9dition de la COnf\u00e9rence en Recherche d&rsquo;Information et Applications &#8211; CORIA 2013<\/i>, Apr 2013, Neufch\u00e2tel, Suisse. 15 p<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00734329v1\" target=\"_blank\" >Functional classification of genes using semantic distance and fuzzy clustering approach: Evaluation with reference sets and overlap analysis<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Benabderrahmane Sidahmed, Malika Smail-Tabbone, Amedeo Napoli, Poch Olivier<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International journal of computational biology and drug design<\/i>, 2012, 5 (3\/4), pp.245-260<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00734349v1\" target=\"_blank\" >Formal Concept Analysis for the Interpretation of Relational Learning applied on 3D Protein-Binding Sites<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smail-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>4th international conference on Knowledge Discovery and Information Retrieval &#8211; KDIR 2012<\/i>, Oct 2012, Barcelona, Spain. 12 p<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00734312v1\" target=\"_blank\" >NRPS toolbox for the discovery of new nonribosomal peptides and synthetases<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Maude Pupin, Malika Sma\u00efl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Val\u00e9rie Lecl\u00e8re<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journ\u00e9es Ouvertes en Biologie, l&rsquo;Informatique et les Math\u00e9matiques &#8211; JOBIM 2012<\/i>, Jul 2012, Rennes, France. pp.89-93<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00617921v1\" target=\"_blank\" >Spatial clustering of protein binding sites for template based protein docking<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Anisah Ghoorah, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Bioinformatics<\/i>, 2011, 27 (20), pp.2820-2827. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/bioinformatics\/btr493\">&#x27E8;10.1093\/bioinformatics\/btr493&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-00642539v1\" target=\"_blank\" >HIV-PDI: A Protein-Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 1. Concepts and Associated Database<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Leo Ghemtio, Malika Sma\u00efl-Tabbone, Appolinaire Djikeng, Marie-Dominique Devignes, Lionel Keminse, Patricia Kelbert, Joseph Fokam, Bernard Maigret, Odile Ouwe-Missi-Oukem-Boyer<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Health &#038; Medical Informatics<\/i>, 2011, 2 (1), pp.1000104. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.4172\/2157-7420.1000104\">&#x27E8;10.4172\/2157-7420.1000104&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-00644438v1\" target=\"_blank\" >Ontology-based functional classification of genes: evaluation with reference sets and overlap analysis<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Amedeo Napoli, Olivier Poch<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>The second workshop on Integrative Data in Systems Biology held in conjunction with the IEEE BIBM 2011 conference<\/i>, Nov 2011, Atlanta, United States<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-00642520v1\" target=\"_blank\" >Use of domain knowledge for dimension reduction: application to mining of drug side effects<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Sma\u00efl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Conference on Knowledge Discovery and Information Retrieval &#8211; KDIR 2011<\/i>, Oct 2011, Paris, France. pp.8<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00617692v1\" target=\"_blank\" >Benchmarking a new semantic similarity measure using fuzzy clustering and reference sets: Application to cancer expression data<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smail-Tabbone, Olivier Poch, Amedeo Napoli, Wolfgang Raffelsberger, Dominique Guenot, Nguyen Hoan, Eric Guerin<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>11\u00e8me Conf\u00e9rence Internationale Francophone sur l&rsquo;Extraction et la Gestion des Connaissances &#8211; EGC 2011<\/i>, Jan 2011, Brest, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00585072v1\" target=\"_blank\" >Ontology-based knowledge discovery in pharmacogenomics.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\">Hamid R. Arabnia and Quoc-Nam Tran. <i>Software Tools and Algorithms for Biological Systems<\/i>, 696, Springer, pp.357-66, 2011, Software Tools and Algorithms for Biological Systems, 978-1-4419-7046-6. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-1-4419-7046-6_36\">&#x27E8;10.1007\/978-1-4419-7046-6_36&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Book sections<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00543910v1\" target=\"_blank\" >IntelliGO: a new vector-based semantic similarity measure including annotation origin<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Sidahmed Benabderrahmane, Malika Sma\u00efl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>BMC Bioinformatics<\/i>, 2010, 11, 11 (1), pp.588. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/1471-2105-11-588\">&#x27E8;10.1186\/1471-2105-11-588&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-00547968v1\" target=\"_blank\" >Comparison of three preprocessing filters efficiency in virtual screening: identification of new putative LXR$\\beta$ regulators as a test case<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Leo Ghemtio, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Michel Souchet, Vincent Leroux, Bernard Maigret<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Chemical Information and Modeling<\/i>, 2010, 50 (5), pp.701-715. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1021\/ci900356m\">&#x27E8;10.1021\/ci900356m&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00522712v1\" target=\"_blank\" >HexServer: an FFT-based protein docking server powered by graphics processors<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Gary Macindoe, Lazaros Mavridis, Vishwesh Venkatraman, Marie-Dominique Devignes, David Ritchie<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Nucleic Acids Research<\/i>, 2010, 38, pp.W445-W449. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/nar\/gkq311\">&#x27E8;10.1093\/nar\/gkq311&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00502297v1\" target=\"_blank\" >BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Journal of Metadata, Semantics and Ontologies<\/i>, 2010, 5 (3), pp.184&#8211;193. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1504\/IJMSO.2010.034043\">&#x27E8;10.1504\/IJMSO.2010.034043&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00545545v1\" target=\"_blank\" >Using Domain Knowledge to Guide Lattice-based Complex Data Exploration<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>19th European Conference on Artificial Intelligence &#8211; ECAI 2010<\/i>, Aug 2010, Lisbon, Portugal. pp.847&#8211;852, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.3233\/978-1-60750-606-5-847\">&#x27E8;10.3233\/978-1-60750-606-5-847&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-00488034v2\" target=\"_blank\" >Connaissances de domaine et treillis de concepts pour l&rsquo;exploration progressive de donn\u00e9es complexes<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>21es Journ\u00e9es francophones d&rsquo;Ing\u00e9nierie des Connaissances &#8211; IC 2010<\/i>, Jun 2010, N\u00eemes, France. pp.233 &#8211; 244<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00359111v1\" target=\"_blank\" >Gene-Disease Relationship Discovery based on Model-driven Data Integration and Database View Definition<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Saliha Yilmaz, Philippe Jonveaux, Cedric Bicep, Laurent Pierron, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Bioinformatics<\/i>, 2009, 25 (2), pp.230 &#8211; 236. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/bioinformatics\/btn612\">&#x27E8;10.1093\/bioinformatics\/btn612&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00433475v1\" target=\"_blank\" >A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">L\u00e9o Ghemtio, Malika Smail-Tabbone, Marie-Dominique Devignes, Michel Souchet, Bernard Maigret<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>KDIR &#8211; International Conference on Knowledge Discovery and Information Retrieval<\/i>, Oct 2009, Madeira, Portugal<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00394530v1\" target=\"_blank\" >Analyse de donn\u00e9es transcriptomiques: Mod\u00e9lisation floue de profils d&rsquo;expression diff\u00e9rentielle et analyse fonctionnelle.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Olivier Poch, Amedeo Napoli, Hoan-Ngoc Nguyen, Wolfgang Raffelsberger<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Actes du XXVIIi\u00e8me congr\u00e8s Informatique des Organisations et Syst\u00e8mes d&rsquo;information et de d\u00e9cision &#8211; INFORSID 2009<\/i>, IRIT-Toulouse, May 2009, Toulouse, France. pp.413-428<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00433477v1\" target=\"_blank\" >Ma\u00eetriser les ressources num\u00e9riques : biologie \u00ab\u00a0in silico<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\">Magali Roux. <i>Biologie L&rsquo;\u00e8re num\u00e9rique<\/i>, CNRS Editions, pp.189-222, 2009, 9782271067791<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Book sections<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00338669v1\" target=\"_blank\" >Ontology-guided data preparation for discovering genotype-phenotype relationships<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>BMC Bioinformatics<\/i>, 2008, 9 (Suppl 4), pp.S3. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1186\/1471-2105-9-S4-S3\">&#x27E8;10.1186\/1471-2105-9-S4-S3&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00339119v1\" target=\"_blank\" >Multiple-step virtual screening using VSM-G: overview and validation of fast geometrical matching enrichment.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Alexandre Beautrait, Vincent Leroux, Matthieu Chavent, L\u00e9o Ghemtio, Marie-Dominique Devignes, Malika Smail-Tabbone, Wensheng Cai, Xuegang Shao, Gilles Moreau, Peter Bladon, Jianhua Yao, Bernard Maigret<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Molecular Modeling<\/i>, 2008, 14 (2), pp.135-148. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/s00894-007-0257-9\">&#x27E8;10.1007\/s00894-007-0257-9&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00338674v1\" target=\"_blank\" >BioRegistry: Automatic Extraction of Metadata for Biological Database Retrieval and Discovery<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Amedeo Napoli, Malika Smail-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>1st international workshop on Ressource Discovery (RED), Joint to iiWAS 2008<\/i>, Nov 2008, Linz, Austria<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00338671v1\" target=\"_blank\" >Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>18th European Conference in Artificial Intelligence &#8211; ECAI 2008<\/i>, Jul 2008, Patras, Greece. pp.127-131<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00338678v1\" target=\"_blank\" >Extending Attribute Dependencies for Lattice-Based Querying and Navigation<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>16th International Conference on Conceptual Structures &#8211; ICCS 2008<\/i>, Jul 2008, Toulouse, France. pp.189-202, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-540-70596-3_13\">&#x27E8;10.1007\/978-3-540-70596-3_13&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00339144v1\" target=\"_blank\" >Model-driven data integration for mining protein-ligand and protein-protein interactions in a drug design context.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Leo Ghemtio, Emmanuel Bresso, Michel Souchet, Bernard Maigret, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journ\u00e9es Ouvertes Biologie Informatique Math\u00e9matiques &#8211; JOBIM 2008<\/i>, Jun 2008, Lille, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00338677v1\" target=\"_blank\" >Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Smail-Tabbone, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>21st International Workshop on Description Logics &#8211; DL2008<\/i>, May 2008, Dresden, Germany<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00187116v1\" target=\"_blank\" >Correction et compl\u00e9tude d&rsquo;un algorithme de recherche d&rsquo;information par treillis de concepts<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Revue des Nouvelles Technologies de l&rsquo;Information<\/i>, 2007<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00338679v1\" target=\"_blank\" >Workshop PC Chairs&rsquo; Message. Web Data Integration for Mining in the Life Sciences (WebDIM4LS)<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Workshops on Web Information Systems Engineering \u2013 WISE 2007 Workshops<\/i>, Dec 2007, Nancy, France. pp.3-4, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-3-540-77010-7_1\">&#x27E8;10.1007\/978-3-540-77010-7_1&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.science\/hal-00509943v1\" target=\"_blank\" >Traitement d&rsquo;attributs inter-d\u00e9pendants pour la recherche d&rsquo;information par treillis<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>18es Journ\u00e9es Francophones d&rsquo;Ing\u00e9nierie des Connaissances &#8211; IC 2007<\/i>, Jul 2007, Grenoble, France. pp.109-120<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00186988v1\" target=\"_blank\" >Ontology-guided Data Preparation for Discovering Genotype-Phenotype Relationships<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Network Tools and Applications in Biology: A Semantic Web for Bioinformatics &#8211; NETTAB 2007<\/i>, Jun 2007, Pisa, Italy<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00103844v1\" target=\"_blank\" >Immunoselection and characterization of a human genomic PPAR binding fragment located within POTE genes<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Hossam Murad, Philippe Collet, Emilie Brunner, Herv\u00e9 Schohn, Philippe Becuwe, Marie-Dominique Devignes, Michel Dau\u00e7a, Lionel Domenjoud<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Biochimie<\/i>, 2006, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/j.biochi.2006.09.017\">&#x27E8;10.1016\/j.biochi.2006.09.017&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00103858v1\" target=\"_blank\" >A transgenic mouse model engineered to investigate human brain-derived neurotrophic factor in vivo<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Fabrice Guillemot, Italina Cerutti, Charles Auffray, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Transgenic Research<\/i>, 2006, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/s11248-006-9060-0\">&#x27E8;10.1007\/s11248-006-9060-0&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00103943v1\" target=\"_blank\" >Effects of PPAR and RXR ligands in semaphorin 6B gene expression of human MCF-7 breast cancer cells.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Hossam Murad, Philippe Collet, Cecile Huin-Schohn, Nehmann Al-Makdissy, Geraldine Kerjan, Alain Chedotal, Mireille Donner, Marie-Dominique Devignes, Philippe Becuwe, Herv\u00e9 Schohn, Lionel Domenjoud, Michel Dau\u00e7a<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>International Journal of Oncology<\/i>, 2006, 28, pp.977-984<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00080960v1\" target=\"_blank\" >Treillis de concepts et ontologies pour interroger l&rsquo;annuaire de sources de donn\u00e9es biologiques BioRegistry<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Revue des Sciences et Technologies de l&rsquo;Information &#8211; S\u00e9rie ISI : Ing\u00e9nierie des Syst\u00e8mes d&rsquo;Information<\/i>, 2006, Syst\u00e8mes d&rsquo;information sp\u00e9cialis\u00e9s, 11 (1), pp.39-60<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00103913v1\" target=\"_blank\" >BR-Explorer: An FCA-based algorithm for Information Retrieval<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Fourth International Conference On Concept Lattices and Their Applications &#8211; CLA 2006<\/i>, Oct 2006, Hammamet\/Tunisia<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00089824v1\" target=\"_blank\" >Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Proceedings of International Workshop on Knowledge Systems in Bioinformatics &#8211; KSinBIT&rsquo;06<\/i>, Oct 2006, Montpellier, France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00067863v2\" target=\"_blank\" >SNP-Ontology for semantic integration of genomic variation data<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>14th Annual International Conference on Intelligent Systems for Molecular Biology &#8211; ISMB&rsquo;06<\/i>, Aug 2006, Fortaleza\/Br\u00e9sil<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00080050v1\" target=\"_blank\" >SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>3rd International Workshop on Data Integration in the Life Sciences 2006 &#8211; DILS&rsquo;06<\/i>, Jul 2006, European Bioinformatics Institute (EBI), Hinxton\/UK<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00080064v1\" target=\"_blank\" >Ontology-driven Data Integration for Pharmacogenomics: Application to Genome Variations<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Malika Sma\u00efl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journ\u00e9es Ouvertes : Biologie, Informatique et Math\u00e9matiques &#8211; JOBIM&rsquo;06<\/i>, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux\/France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00103947v1\" target=\"_blank\" >BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster)<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>4th International Conference on Formal Concept Analysis &#8211; ICFCA 2006<\/i>, Feb 2006, Dresden\/Germany<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00103937v1\" target=\"_blank\" >Classification et interrogation de sources de donn\u00e9es biologiques<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Revue des Nouvelles Technologies de l&rsquo;Information<\/i>, 2005, Extraction des connaissances : Etat et perspectives, pp.43-47<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000419v1\" target=\"_blank\" >User-designed web services to support heterogeneous biological data retrieval<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Herv\u00e9 de Palma, Laurent Pierron, Lionel Domenjoud, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>First International Workshop on workflows management: new abilities for the biological information overflow &#8211; NETTAB 2005<\/i>, Oct 2005, Naples, Italy, pp.27-34<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000418v1\" target=\"_blank\" >BioRegistry : a structured metadata repository for bioinformatic databases<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Malika Sma\u00efl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>First International Symposium on Computational Life Science &#8211; CompLife 2005<\/i>, Sep 2005, Konstanz, Germany, pp.46-56<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000102v1\" target=\"_blank\" >Querying a Bioinformatic Data Sources Registry with Concept Lattices<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>3th International Conference on Conceptual Structures &#8211; ICCS 2005<\/i>, Jun 2005, Kassel, Germany. pp.323-336, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/11524564_22\">&#x27E8;10.1007\/11524564_22&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000101v1\" target=\"_blank\" >Treillis de concepts et ontologies pour l&rsquo;interrogation d&rsquo;un annuaire de sources de donn\u00e9es biologiques (BioRegistry)<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone, Amedeo Napoli<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Actes du XXIII\u00e8me congr\u00e8s Informatique des Organisations et Syst\u00e8mes d&rsquo;information et de d\u00e9cision &#8211; INFORSID 2005<\/i>, May 2005, Grenoble\/France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000152v1\" target=\"_blank\" >M\u00e9thode s\u00e9mantique pour la classification et l&rsquo;interrogation de sources de donn\u00e9es biologiques<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>EGC 2005 &#8211; Atelier Mod\u00e9lisation des Connaissances<\/i>, Jan 2005, Paris<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00080156v1\" target=\"_blank\" >Extraction de donn\u00e9es pharmacog\u00e9nomiques \u00e0 partir d&rsquo;\u00e9tudes cliniques : probl\u00e9matique<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Adrien Coulet, Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Deuxi\u00e8me atelier sur la \u00ab\u00a0Fouille de donn\u00e9es complexes dans un processus d&rsquo;extraction des connaissances\u00a0\u00bb<\/i>, Jan 2005, Paris\/France<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00100184v1\" target=\"_blank\" >The human Semaphorin 6B gene is down regulated by PPARs<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Philippe Collet, Lionel Domenjoud, Marie-Dominique Devignes, Hossam Murad, Herv\u00e9 Schohn, Michel Dau\u00e7a<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Genomics<\/i>, 2004, 83 (6), pp.1141-1150<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00100186v1\" target=\"_blank\" >Alternative usage of 5&prime; exons in the chicken nerve growth factor gene: refined characterization of a weakly expressed gene<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Odile Bertaux, Esther Toselli-Mollereau, Charles Auffray, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Gene<\/i>, 2004, 334, pp.83-97<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00099938v1\" target=\"_blank\" >Integrative annotation of 21,037 human genes validated by full-length cDNA clones.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O&rsquo;Donovan, Satoshi Fukuchi, O. Koyanagi Kanako, A. Barrero Roberto, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino, Kei Yura, Satoru Miyazaki, Kazuho Ikeo, Keiichi Homma, Arek Kasprzyk, Tetsuo Nishikawa, Mika Hirakawa, Jean Thierry-Mieg, Danielle Thierry-Mieg, Jennifer Ashurst, Libin Jia, Mitsuteru Nakao, A. Thomas, Michael, Nicola Mulder, Youla Karavidopoulou, Lihua Jin, Sangsoo Kim, Tomohiro Yasuda, Boris Lenhard, Eric Eveno, Yoshiyuki Suzuki, Jun-Ichi Takeda, Craig Gough, Phillip Hilton, Yasuyuki Fujii, Hiroaki Sakai, Susumu Tanaka, Clara Amid, Matthew Bellgard,, Maria de Fatima Bonaldo, Hidemasa Bono, K. Bromberg Susan, J. Brookes Anthony, Elspeth Bruford, Piero Carninci, Claude Chelala, Christine Couillault, J. de Souza Sandro, Marie-Anne Debily, Marie-Dominique Devignes, Inna Dubchak, Toshinori Endo, Anne Estreicher, Eduardo Eyras, Kaoru Fukami-Kobayashi, R. Gopinath Gopal, Esther Graudens, Yoonsoo Hahn, Ze-Guang Han, Michael Han, Kousuke Hanada, Hideki Hanaoka, Erimi Harada, Katsuyuki Hashimoto, Chisato Yamasaki, Ursula Hinz, Momoki Hirai, Teruyoshi Hishiki, Ian Hopkinson, Sandrine Imbeaud, Hidetoshi Inoko, Alexander Kanapin, Yayoi Kaneko, Takeya Kasukawa, Janet Kelso, Paul Kersey, Reiko Kikuno, Kouichi Kimura, Bernhard Korn, Vladimir Kuryshev, Izabela Makalowska, Takashi Makino, Shuhei Mano, Regine Mariage-Samson, Jun Mashima, Hideo Matsuda, Hans-Werner Mewes, Shinsei Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, Osamu Ogasawara, Osamu Ohara, Masafumi Ohtsubo, Norihiro Okada, Toshihisa Okido, Satoshi Oota, Motonori Ota, Toshio Ota, Tetsuji Otsuki, Dominique Piatier-Tonneau, Annemarie Poustka, Shuang-Xi Ren, Naruya Saitou, Katsunaga Sakai, Shigetaka Sakamoto, Ryuichi Sakate, Ingo Schupp, Florence Servant, Stephen Sherry, Rie Shiba, Sumio Sugano<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>PLoS Biology<\/i>, 2004, 2 (6), pp.856-875<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000153v1\" target=\"_blank\" >Intelligent access to genomic sources on the web<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Nizar Messai, Amedeo Napoli, Shazia Osman, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>W3C Workshop on Semantic Web for Life Sciences<\/i>, Oct 2004, Cambridge, Massachusetts USA<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00107769v1\" target=\"_blank\" >Integration of biological data from web resources : management of multiple answers through metadata retrieval<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Malika Sma\u00efl-Tabbone<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>12th International Conference on Intelligent Systems for Molecular Biology &#8211; 3rd European Conference on Computational Biology &#8211; ISMB-ECCB 2004<\/i>, 2004, Glasgow, Scotland, United Kingdom. pp.3<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00107665v1\" target=\"_blank\" >A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Yvan Norsa, Malika Sma\u00efl-Tabbone, Philippe Collet, Lionel Domenjoud, Michel Dau\u00e7a<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>European Conference on Computational Biology &#8211; ECCB&rsquo;03<\/i>, Sep 2003, Paris, France. pp.2<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00100799v1\" target=\"_blank\" >Collecte et int\u00e9gration de donn\u00e9es biologiques h\u00e9t\u00e9rog\u00e8nes sur le web : application dans le domaine de la cartographie du g\u00e9nome humain<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Andr\u00e9 Schaaff, Malika Sma\u00efl<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Revue des Sciences et Technologies de l&rsquo;Information &#8211; S\u00e9rie ISI : Ing\u00e9nierie des Syst\u00e8mes d&rsquo;Information<\/i>, 2002, 7 (1-2), pp.45-61<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000241v1\" target=\"_blank\" >Inconsistencies between maps of human chromosome 22 correlate with increased frequency of disease-related Loci<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Claude Chelala, Marie-Dominique Devignes, Sandrine Imbeaud, Rima Zoorob, David Cox, Charles Auffray, Emmanuel Curis, Simone Benazeth<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Biological Systems<\/i>, 2002, 10, pp.303-317. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1142\/S0218339002000743\">&#x27E8;10.1142\/S0218339002000743&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000237v1\" target=\"_blank\" >Characterization of tissue expression and full-length coding sequence of a novel human gene mapping at 3q12.1 and transcribed in oligodendrocytes.<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nicole-Adeline Fayein, Bernard Stankoff, Charles Auffray, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Gene<\/i>, 2002, 289 (1-2), pp.119-129. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/S0378-1119(02)00507-3\">&#x27E8;10.1016\/S0378-1119(02)00507-3&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00107608v1\" target=\"_blank\" >Collecte de donn\u00e9es biologiques \u00e0 partir de sources multiples et h\u00e9t\u00e9rog\u00e8nes. Vers une structure de m\u00e9diation conviviale et orient\u00e9e source<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Malika Sma\u00efl, Nacer Boudjlida<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journ\u00e9es scientifiques sur le Web s\u00e9mantique<\/i>, J. Charlet, P. Laublet, C. Raynaud, Oct 2002, Paris, France, 5 p<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00101042v1\" target=\"_blank\" >From putative promoter sequence to genomic context : biological data collection on the web using a generic application (Xprom)<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Yvan Norsa, Malika Sma\u00efl, Philippe Collet, Lionel Domenjoud<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>European Conference on Computational Biology &#8211; ECCB&rsquo;2002. Session Posters<\/i>, Sep 2002, Saarbr\u00fccken, Germany, 2 p<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00000242v1\" target=\"_blank\" >Refined localization of twenty-one genes in subregion p13.1 of human chromosome 1<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Claude Chelala, Sandrine Imbeaud, Marie-Dominique Devignes, Rima Zoorob, Charles Auffray<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Cytogenetics and Cell Genetics<\/i>, 2001, 92 (3-4), pp.209-212. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1159\/000056904\">&#x27E8;10.1159\/000056904&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00099248v1\" target=\"_blank\" >Services for a Genomics Open Distributed Environment<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Nacer Boudjlida, Malika Sma\u00efl-Tabbone, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>XEWA&rsquo;2000: IEEE Workshop on XML-Enabled Wide Area Search in Bioinformatics<\/i>, 2000, League City, Texas, 2 p<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/hal-00098890v1\" target=\"_blank\" >The Genexpress IMAGE Knowledge base of human brain transcriptome : a prototype of integrated resource for functional and computational genomics<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Genevi\u00e8ve Pietu, R\u00e9gine Mariage-Samson, Nicole Fayein, Christiane Matingou, Eric Eveno, R\u00e9mi Houlgatte, Charles Decraene, Yves Vandenbrouck, Fariza Tahi, Marie-Dominique Devignes, Utte Wirkner, Wilhelm Ansorge, David Cox, Takahiro Nagase, Nobuo Nomura, Charles Auffray<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Genome Research<\/i>, 1999, 9 (2), pp.195-209<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00098891v1\" target=\"_blank\" >Detailed transcript map of a 810-kb region at 11p14 involving identification of 10 novel human 3&prime; exons<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Fabrice Guillemot, Charles Auffray, Marie-Dominique Devignes<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>European Journal of Human Genetics<\/i>, 1999, 7 (4), pp.487-495<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/inria.hal.science\/inria-00098983v1\" target=\"_blank\" >Querying Heterogeneous Databases : a user oriented system for collecting and structuring genome information<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Devignes, Andr\u00e9 Schaaff, Malika Sma\u00efl<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Intelligent Systems for Molecular Biology 1999 &#8211; ISMB&rsquo;99<\/i>, 1999, Heidelberg, Germany, pp.30<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Conference papers<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02911066v1\" target=\"_blank\" >Can Plant RNA Viruses Exchange Genetic Material?<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Jean-Christophe Boyer, Marie-Dominique Morch, Anne-Lise Haenni<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Evolutionary Tinkering in Gene Expression<\/i>, 70 (5), Springer US, pp.175-192, 1989, <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1007\/978-1-4684-5664-6_17\">&#x27E8;10.1007\/978-1-4684-5664-6_17&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Book sections<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02911058v1\" target=\"_blank\" >Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellow mosaic virus genomic RNA<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Marie-Dominique Morch, Jean-Christophe Boyer, Anne-Lise Haenni<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Nucleic Acids Research<\/i>, 1988, 16 (13), pp.6157-6173. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1093\/nar\/16.13.6157\">&#x27E8;10.1093\/nar\/16.13.6157&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02911646v1\" target=\"_blank\" >Plant viruses and new perspectives in cross-protection<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Rosaura P.C. Valle, Jacek Skrzeczkowski, Marie-Dominique Morch, Rajiv L Joshi, Radhia Gargouri, Gabri\u00e8le Drugeon, Jean-Christophe Boyer, Fran\u00e7ois Chapeville, Anne-Lise Haenni<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Biochimie<\/i>, 1988, 70 (5), pp.695-703. <a target=\"_blank\" href=\"https:\/\/dx.doi.org\/10.1016\/0300-9084(88)90255-6\">&#x27E8;10.1016\/0300-9084(88)90255-6&#x27E9;<\/a><\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl>\n<dl class='NoticeRes'>\n<dt class=\"ChampRes\">titre<\/dt>\n<dd class=\"ValeurRes Titre\"><a href=\"https:\/\/hal.inrae.fr\/hal-02728413v1\" target=\"_blank\" >Phospholipid transfer protein: full-length cDNA and amino acid sequence in maize<\/a><\/dd>\n<dt class=\"ChampRes\">auteur<\/dt>\n<dd class=\"ValeurRes Auteurs\">Fran\u00e7oise Tchang, Patrice This, Virginia Stiefel, Vincent Arondel, Marie-Dominique Morch, Montserrat Pages, Pere Puigdomenech, Fran\u00e7oise Grellet, Michel Delseny, Philippe Bouillon, Jean-Claude Huet, Francoise Guerbette, Fran\u00e7oise Beauvais-Cante, Henri Duranton, J Claude Pernollet, Jean-Claude Kader<\/dd>\n<dt class=\"ChampRes\">article<\/dt>\n<dd class=\"ValeurRes article\"><i>Journal of Biological Chemistry<\/i>, 1988, 263 (32), pp.16849-16855<\/dd>\n<dt class=\"ChampRes\">typdoc<\/dt>\n<dd class=\"ValeurRes Type_de_document\">Journal articles<\/dd>\n<\/dl><\/div>\n<p> <\/body> <\/html> <\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-fullwidth.php","meta":{"footnotes":""},"class_list":["post-13","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/pages\/13","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/comments?post=13"}],"version-history":[{"count":40,"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/pages\/13\/revisions"}],"predecessor-version":[{"id":472,"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/pages\/13\/revisions\/472"}],"wp:attachment":[{"href":"https:\/\/members.loria.fr\/MDDevignes\/wp-json\/wp\/v2\/media?parent=13"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}