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Liste Complète (1979-2019) via PubMed NCBI

Liste Complète (1999-2019) retournée par HAL-INRIA

Publications HAL de Marie-Dominique,Devignes; Marie-Dominique,Morch; Marie-Dominique,Morch-Devignes; Marie-Dominique,Devignes-Morch

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Criteria : Author : « Marie-Dominique,Devignes; Marie-Dominique,Morch; Marie-Dominique,Morch-Devignes; Marie-Dominique,Devignes-Morch », Publication year >= « 1980 » to « 2019 »
Number of occurrences founded : 111.

titre
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
auteur
Naihui Zhou, Yuxiang Jiang, Timothy Bergquist, Alexandra Lee, Balint Kacsoh, Alex Crocker, Kimberley Lewis, George Georghiou, Huy Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca Hurto, Peter Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, Jose Fernandez, Branislava Gemovic, Vladimir Perovic, Radoslav Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice Mchardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex Freitas, Magdalena Antczak, Fabio Fabris, Mark Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel Roche, Jonas Reeb, David Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage Black, Dane Jo, Erica Suh, Jonathan Dayton, Dallas Larsen, Ashton Omdahl, Liam Mcguffin, Danielle Brackenridge, Patricia Babbitt, Jeffrey Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven Brenner, Christine Orengo, Constance Jeffery, Giovanni Bosco, Deborah Hogan, Maria Martin, Claire O’donovan, Sean Mooney, Casey Greene, Predrag Radivojac, Iddo Friedberg
article
Genome Biology, BioMed Central, 2019, 20 (1), ⟨10.1186/s13059-019-1835-8⟩
typdoc
Journal articles
titre
Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs
auteur
Nicolas Soler, Emilie Robert, Isaure Chauvot de Beauchêne, Philippe Monteiro, Virginie Libante, Bernard Maigret, Johan Staub, David W. Ritchie, Gérard Guédon, Sophie Payot, Marie-Dominique Devignes, Nathalie Leblond-Bourget
article
Mobile DNA, BioMed Central, 2019, 10 (1), ⟨10.1186/s13100-019-0160-9⟩
typdoc
Journal articles
titre
Application of Artificial Intelligence to Gastroenterology and Hepatology
auteur
Catherine Le Berre, William Sandborn, Sabeur Aridhi, Marie-Dominique Devignes, Laure Fournier, Malika Smail-Tabbone, Silvio Danese, Laurent Peyrin-Biroulet
article
Gastroenterology, WB Saunders, 2019, S0016-5085 (19), pp.41412-1. ⟨10.1053/j.gastro.2019.08.058⟩
typdoc
Journal articles
titre
Extended persistence of antiphospholipid antibodies beyond the twelve‐week time interval: Association with baseline antiphospholipid antibodies titres
auteur
Jean Devignes, Malika Smaïl-Tabbone, Alex Hervé, Geoffroy Cagninacci, Marie-Dominique Devignes, Thomas Lecompte, Stéphane Zuily, Denis Wahl
article
International Journal of Laboratory Hematology, Wiley, 2019, 41 (6), pp.726-730. ⟨10.1111/ijlh.13094⟩
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Journal articles
titre
Plasma protein biomarkers and their association with mutually exclusive cardiovascular phenotypes: the FIBRO‑TARGETS case–control analyses
auteur
Joao Pedro Ferreira, Anne Pizard, Jean-Loup Machu, Emmanuel Bresso, Hans-Peter Brunner-Larocca, Nicolas Girerd, Leroy Céline, Arantxa González, Javier Díez, Stephane Heymans, Marie-Dominique Devignes, Patrick Rossignol, Faiez Zannad
article
Clinical Research in Cardiology, Springer Verlag, 2019
typdoc
Journal articles
titre
Computational Discovery of Direct Associations between GO terms and Protein Domains
auteur
Seyed Ziaeddin Alborzi, David Ritchie, Marie-Dominique Devignes
article
BMC Bioinformatics, BioMed Central, 2018, 19 (Suppl 14), pp.413. ⟨10.1186/s12859-018-2380-2⟩
typdoc
Journal articles
titre
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach
auteur
Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet
article
Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium
typdoc
Conference papers
titre
First steps toward finding relevant pathology-gene pairs using analogy
auteur
Marie-Dominique Devignes, Yohann Fransot, Yves Lepage, Jean Lieber, Emmanuel Nauer, Malika Smaïl-Tabbone
article
EvoCBR 2018 : Workshop on Evolutionary Computation and CBR at the International Conference on Case-Based Reasoning (ICCBR 2018), Jul 2018, Stockholm, Sweden
typdoc
Conference papers
titre
Découverte d’associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologies
auteur
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
article
Journée I.A. et Santé, Jul 2018, Nancy, France
typdoc
Conference papers
titre
PPI DomainMiner: predicting domain-domain interactions from protein-protein interactions using tripartite graph modeling and vector similarity
auteur
Seyed Ziaeddin Alborzi, Sabeur Aridhi, Dave Ritchie, Marie-Dominique Devignes
article
ECCB 2018 – 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece
typdoc
Poster communications
titre
A data science approach for exploring differential expression profiles of genes in transcriptomic studies-Application to the understanding of ageing in obese and lean rats in the FIGHT-HF project
auteur
Emmanuel Bresso, Claire Lacomblez, Anne Pizard, Patrick Rossignol, Faiez Zannad, Malika Smaïl-Tabbone, Marie-Dominique Devignes
article
JOBIM 2018 – Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
typdoc
Poster communications
titre
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains
auteur
Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David W. Ritchie
article
BMC Bioinformatics, BioMed Central, 2017, 18 (1), pp.107. ⟨10.1186/s12859-017-1519-x⟩
typdoc
Journal articles
titre
Low-dose alkylphenol exposure promotes mammary epithelium alterations and transgenerational developmental defects, but does not enhance tumorigenic behaviour of breast cancer cells
auteur
Clémence Chamard-Jovenin, Charlène Thiébaut, Amand Chesnel, Emmanuel Bresso, Chloé Morel, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Taha Boukhobza, Hélène Dumond
article
Frontiers in Endocrinology, Frontiers, 2017, 8, pp.272. ⟨10.3389/fendo.2017.00272⟩
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Journal articles
titre
A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins
auteur
Charles Coluzzi, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie Leblond-Bourget
article
Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.16. ⟨10.3389/fmicb.2017.00443⟩
typdoc
Journal articles
titre
Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models
auteur
Marwa El Houasli, Bernard Maigret, Marie-Dominique Devignes, Anisah Ghoorah, Sergei Grudinin, David Ritchie
article
Proteins: Structure, Function, and Genetics, Wiley, 2017, Special Issue: Sixth Meeting on the Critical Assessment of Predicted Interactions 85 (3), pp.463-469. ⟨10.1002/prot.25182⟩
typdoc
Journal articles
titre
Discovering associations between adverse drug events using pattern structures and ontologies
auteur
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
article
Journal of Biomedical Semantics, BioMed Central, 2017, 93, pp.539 – 546. ⟨10.1186/s13326-017-0137-x⟩
typdoc
Journal articles
titre
Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
auteur
Seyed Ziaeddin Alborzi, Sabeur Aridhi, Marie-Dominique Devignes, Rabie Saidi, Alexandre Renaux, Maria J. Martin, David W. Ritchie
article
Function-SIG ISMB/ECCB 2017, biofunctionprediction.org, Jul 2017, Prague, Czech Republic
typdoc
Conference papers
titre
Associating Gene Ontology Terms with Pfam Protein Domains
auteur
Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David Ritchie
article
5th International Work-Conference on Bioinformatics and Biomedical Engineering – IWBBIO 2017, Apr 2017, Granada, Spain. pp.127-138, ⟨10.1007/978-3-319-56154-7_13⟩
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Conference papers
titre
Neighborhood-Based Label Propagation in Large Protein Graphs
auteur
Sabeur Aridhi, Seyed Ziaeddin Alborzi, Malika Smaïl-Tabbone, Marie-Dominique Devignes, David Ritchie
article
Function SIG @ ISMB/ECCB 2017, Jul 2017, Prague, Czech Republic. pp.2
typdoc
Poster communications
titre
Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
auteur
Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Sabeur Aridhi, Rabie Saidi, Alexandre Renaux, Maria J. Martin, David W. Ritchie
article
Function-SIG ISMB/ECCB 2017, Jul 2017, Prague, Czech Republic. 2017
typdoc
Poster communications
titre
Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment
auteur
Marc F. Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovy, Andrej Sali, Joan Segura, Narcis Fernandez-Fuentes, Shruthi Viswanath, Ron Elber, Sergei Grudinin, Petr Popov, Emilie Neveu, Hasup Lee, Minkyung Baek, Sangwoo Park, Lim Heo, Gyu Rie Lee, Chaok Seok, Sanbo Qin, Huan-Xiang Zhou, David W. Ritchie, Bernard Maigret, Marie-Dominique Devignes, Anisah Ghoorah, Mieczyslaw Torchala, Raphaël Chaleil, Paul A Bates, Efrat Ben-Zeev, Miriam Eisenstein, Surendra Negi S., Thom Vreven, Brian G Pierce, Tyler Borrman, Jinchao Yu, Françoise Ochsenbein, Zhiping Weng, Raphaël Guerois, Anna Vangone, João Rodrigues, Gydo van Zundert, Mehdi Nellen, Li Xue, Ezgi Karaca, Adrien S. J. Melquiond, Koen Visscher, Panagiotis L Kastritis, Alexandre Bonvin, Xianjin Xu, Liming Qiu, Chengfei Yan, Jilong Li, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Yang Sheng, Lenna Peterson, Hyung-Rae Kim, Amit Roy, Xusi Han, Juan Esquivel-Rodríguez, Daisuke Kihara, Xiaofeng Yu, Neil J. Bruce, Jonathan C. Fuller, Rebbecca Wade, Ivan Anishchenko, Petras Kundrotas, Ilya Vakser, Kenichiro Imai, Kazunori Yamada, Toshiyuki Oda, Tsukasa Nakamura, Kentaro Tomii, Chiara Pallara, Miguel Romero-Durana, Brian Jiménez-García, Iain H Moal, Juan Fernández-Recio, Jong Young Joung, Jong Yun Kim, Keehyoung Joo, Jooyoung Lee, Dima Kozakov, Sandor Vajda, Scott Mottarella, David Hall, Dmitri Beglov, Artem Mamonov, Bing Xia, Tanggis Bohnuud, Carlos del Carpio, Eichiro Ichiishi, Nicholas Marze, Daisuke Kuroda, Shourya Burman, Jeffrey J Gray, Edrisse Chermak, Luigi Cavallo, Romina Oliva, Andrey Tovchigrechko, Shoshana J Wodak
article
Proteins – Structure, Function and Bioinformatics, Wiley, 2016, Special Issue: Eleventh Meeting on the Critical Assessment of Techniques for Protein Structure Prediction, 84 (S1), pp.323-348. ⟨10.1002/prot.25007⟩
typdoc
Journal articles
titre
Kbdock – Searching and organising the structural space of protein-protein interactions
auteur
Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
article
ERCIM News, ERCIM, 2016, pp.24-25
typdoc
Journal articles
titre
New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration
auteur
Chloé Ambroset, Charles Coluzzi, Gérard Guédon, Marie-Dominique Devignes, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie Leblond-Bourget
article
Frontiers in microbiology, Frontiers Research Foundation, 2016, 6, pp.1483. ⟨10.3389/fmicb.2015.01483⟩
typdoc
Journal articles
titre
Transgenerational effects of ERalpha36 over-expression on mammary gland development and molecular phenotype: clinical perspective for breast cancer risk and therapy.
auteur
Clémence Chamard-Jovenin, Amand Chesnel, Emmanuel Bresso, Chloé Morel, Charlène Thiébaut, Malika Smail-Tabbone, El-Hadi Djermoune, Marie-Dominique Devignes, Taha Boukhobza, Hélène Dumond
article
21st World Congress on Advances in Oncology and 19th International Symposium on Molecular Medicine, Oct 2016, Athens, Greece
typdoc
Conference papers
titre
Discovering ADE associations from EHRs using pattern structures and ontologies
auteur
Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
article
Phenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States
typdoc
Conference papers
titre
Using aggregation functions on structured data: a use case in the FIGHT-HF project
auteur
Kevin Dalleau, Miguel Couceiro, Marie-Dominique Devignes, Chedy Raïssi, Malika Smaïl-Tabbone
article
International Symposium on Aggregation and Structures (ISAS 2016) , Jul 2016, Luxembourg, Luxembourg
typdoc
Conference papers
titre
Extraction d’association d’EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies
auteur
Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
article
Deuxième Atelier sur l’Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France
typdoc
Conference papers
titre
Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ERα36-mediated mechanism
auteur
Clémence Chamard-Jovenin, Amand Chesnel, Chloé Morel, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Taha Boukhobza, Hélène Dumond
article
2nd French Workshop on Endocrine disruption in wildlife and human health, Jan 2016, Paris, France
typdoc
Conference papers
titre
Classification and Exploration of 3D Protein Domain Interactions Using Kbdock
auteur
Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
article
O. Carugo; F. Eisenhaber. Data Mining Techniques for the Life Sciences, 1415, Springer Science+Business Media New York, pp.91-105, 2016, Methods in Molecular Biology, 978-1-4939-3570-3. ⟨10.1007/978-1-4939-3572-7_5⟩
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Book sections
titre
Using Content-Based Filtering to Infer Direct Associations between the CATH, Pfam, and SCOP Domain Databases
auteur
Seyed Ziaeddin Alborzi, David W. Ritchie, Marie-Dominique Devignes
article
ECCB 2016, Sep 2016, The Hague, Netherlands
typdoc
Poster communications
titre
A Structure-Based Classification and Analysis of Protein Domain Family Binding Sites and Their Interactions
auteur
Anisah Ghoorah, Marie-Dominique Devignes, Seyed Alborzi, Malika Smaïl-Tabbone, David Ritchie
article
Biology, MDPI 2015, 4 (2), pp.327-343. ⟨10.3390/biology4020327⟩
typdoc
Journal articles
titre
Long chain alkyphenol mixture promotes breast cancer initiation and progression through an ER$\alpha-mediated mechanism
auteur
Clémence Chamard-Jovenin, Amand Chesnel, Chloé Morel, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Taha Boukobza, Hélène Dumond
article
2nd International Symposium of the Cancer Research Center of Lyon, Sep 2015, Lyon, France
typdoc
Conference papers
titre
EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains
auteur
Seyed Alborzi, Marie-Dominique Devignes, David Ritchie
article
JOBIM 2015, Jul 2015, Clermont-Ferrand, France. ⟨10.1101/022343⟩
typdoc
Conference papers
titre
Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ER36-mediated mechanism
auteur
Clémence Chamard-Jovenin, Amand Chesnel, Chloé Morel, Emmanuel Bresso, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Taha Boukobza, Hélène Dumond
article
4ème Colloque Inter-Régional Grand-Est de Recherche Translationnelle en Oncologie, Oncotrans 2015, Jun 2015, Dijon, France
typdoc
Conference papers
titre
ECCB 2014: The 13th European Conference on Computational Biology
auteur
Marie-Dominique Devignes, Yves Moreau
article
Bioinformatics, Oxford University Press (OUP), 2014, 30 (17), pp.4. ⟨10.1093/bioinformatics/btu512⟩
typdoc
Journal articles
titre
Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery
auteur
Thibault Caradec, Maude Pupin, Aurélien Vanvlassenbroeck, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jacques, Valérie Leclère
article
PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e85667. ⟨10.1371/journal.pone.0085667⟩
typdoc
Journal articles
titre
KBDOCK 2013: A spatial classification of 3D protein domain family interactions
auteur
Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
article
Nucleic Acids Research, Oxford University Press, 2014, 42 (D1), pp.389-395
typdoc
Journal articles
titre
Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an ERalpha36-mediated mechanism.
auteur
Clémence Chamard, Emmanuel Bresso, Taha Boukobza, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amand Chesnel, Hélène Dumond
article
8e Forum du Canceropôle Grand Est, Nov 2014, Strasbourg, France
typdoc
Conference papers
titre
ILP for Mining Linked Open Data: a biomedical Case Study
auteur
Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
article
The 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France
typdoc
Conference papers
titre
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability
auteur
Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
article
Data Integration in the Life Sciences – 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 – 31, ⟨10.1007/978-3-319-08590-6_2⟩
typdoc
Conference papers
titre
Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an estrogen receptor alpha 36 mediated mechanism
auteur
Clémence Chamard, Emmanuel Bresso, Taha Boukhobza, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amand Chesnel, Hélène Dumond
article
23rd Biennial Congress of the European Association for Cancer Research, EACR-23, Jul 2014, Munich, Germany. pp.S118, ⟨10.1016/S0959-8049(14)50435-2⟩
typdoc
Conference papers
titre
Proceedings of ECCB 2014: The 13th European Conference on Computational Biology
auteur
Marie-Dominique Devignes
article
The 13th European Conference on Computational Biology, Sep 2014, Strasbourg, France. 30 (17), Oxford University Press, 2014, Bioinformatics
typdoc
Directions of work or proceedings
titre
Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability
auteur
Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet
article
ECCB’14 (European Conference on Computational Biology 2014), Sep 2014, Strasbourg, France. 2014
typdoc
Poster communications
titre
Extended spectrum of MBD5 mutations in neurodevelopmental disorders
auteur
Céline Bonnet, Asma Ali Khan, Emmanuel Bresso, Charlène Vigouroux, Mylène Béri, Sarah Lejczak, Bénédicte Deemer, Joris Andrieux, Christophe Philippe, Anne Moncla, Irina Giurgea, Marie-Dominique Devignes, Bruno Leheup, Philippe Jonveaux
article
European Journal of Human Genetics, Nature Publishing Group, 2013, 21 (12), pp.1457 – 1461. ⟨10.1038/ejhg.2013.22⟩
typdoc
Journal articles
titre
Protein Docking Using Case-Based Reasoning
auteur
Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
article
Proteins – Structure, Function and Bioinformatics, Wiley, 2013, 81 (12), pp.2150-2158. ⟨10.1002/prot.24433⟩
typdoc
Journal articles
titre
Integrative relational machine-learning for understanding drug side-effect profiles
auteur
Emmanuel Bresso, Renaud Grisoni, Gino Marchetti, Arnaud-Sinan Karaboga, Michel Souchet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
article
BMC Bioinformatics, BioMed Central, 2013, 14 (1), pp.207. ⟨10.1186/1471-2105-14-207⟩
typdoc
Journal articles
titre
Clustering optimal de gènes fondé sur une mesure de similarité sémantique
auteur
Rachid Hafiane, Malika Smaïl-Tabbone, Marie-Dominique Devignes, Salvatore Tabbone
article
10ème édition de la COnférence en Recherche d’Information et Applications – CORIA 2013, Apr 2013, Neufchâtel, Suisse. 15 p
typdoc
Conference papers
titre
Functional classification of genes using semantic distance and fuzzy clustering approach: Evaluation with reference sets and overlap analysis
auteur
Marie-Dominique Devignes, Benabderrahmane Sidahmed, Malika Smail-Tabbone, Amedeo Napoli, Poch Olivier
article
International journal of computational biology and drug design, Inderscience Enterprise, 2012, 5 (3/4), pp.245-260
typdoc
Journal articles
titre
Formal Concept Analysis for the Interpretation of Relational Learning applied on 3D Protein-Binding Sites
auteur
Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smail-Tabbone
article
4th international conference on Knowledge Discovery and Information Retrieval – KDIR 2012, Oct 2012, Barcelona, Spain. 12 p
typdoc
Conference papers
titre
NRPS toolbox for the discovery of new nonribosomal peptides and synthetases
auteur
Maude Pupin, Malika Smaïl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Valérie Leclère
article
Journées Ouvertes en Biologie, l’Informatique et les Mathématiques – JOBIM 2012, Jul 2012, Rennes, France. pp.89-93
typdoc
Conference papers
titre
Spatial clustering of protein binding sites for template based protein docking
auteur
Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie
article
Bioinformatics, Oxford University Press (OUP), 2011, 27 (20), pp.2820-2827. ⟨10.1093/bioinformatics/btr493⟩
typdoc
Journal articles
titre
HIV-PDI: A Protein-Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 1. Concepts and Associated Database
auteur
Leo Ghemtio, Malika Smaïl-Tabbone, Appolinaire Djikeng, Marie-Dominique Devignes, Lionel Keminse, Patricia Kelbert, Joseph Fokam, Bernard Maigret, Odile Ouwe-Missi-Oukem-Boyer
article
Journal of Health & Medical Informatics, 2011, 2 (1), pp.1000104. ⟨10.4172/2157-7420.1000104⟩
typdoc
Journal articles
titre
Ontology-based functional classification of genes: evaluation with reference sets and overlap analysis
auteur
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch
article
The second workshop on Integrative Data in Systems Biology held in conjunction with the IEEE BIBM 2011 conference, Nov 2011, Atlanta, United States
typdoc
Conference papers
titre
Use of domain knowledge for dimension reduction: application to mining of drug side effects
auteur
Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli, Marie-Dominique Devignes
article
International Conference on Knowledge Discovery and Information Retrieval – KDIR 2011, Oct 2011, Paris, France. pp.8
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Conference papers
titre
Benchmarking a new semantic similarity measure using fuzzy clustering and reference sets: Application to cancer expression data
auteur
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smail-Tabbone, Olivier Poch, Amedeo Napoli, Wolfgang Raffelsberger, Dominique Guenot, Nguyen Hoan, Eric Guerin
article
11ème Conférence Internationale Francophone sur l’Extraction et la Gestion des Connaissances – EGC 2011, Jan 2011, Brest, France
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Conference papers
titre
Ontology-based knowledge discovery in pharmacogenomics.
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
article
Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Advances in Experimental Medicine and Biology, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩
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Book sections
titre
IntelliGO: a new vector-based semantic similarity measure including annotation origin
auteur
Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Olivier Poch, Amedeo Napoli, Marie-Dominique Devignes
article
BMC Bioinformatics, BioMed Central, 2010, 11, 11 (1), pp.588. ⟨10.1186/1471-2105-11-588⟩
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Journal articles
titre
Comparison of three preprocessing filters efficiency in virtual screening: identification of new putative LXRbeta regulators as a test case
auteur
Leo Ghemtio, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Michel Souchet, Vincent Leroux, Bernard Maigret
article
Journal of Chemical Information and Modeling, American Chemical Society, 2010, 50 (5), pp.701-715
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Journal articles
titre
HexServer: an FFT-based protein docking server powered by graphics processors
auteur
Gary Macindoe, Lazaros Mavridis, Vishwesh Venkatraman, Marie-Dominique Devignes, David Ritchie
article
Nucleic Acids Research, Oxford University Press, 2010, 38, pp.W445-W449. ⟨10.1093/nar/gkq311⟩
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Journal articles
titre
BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery
auteur
Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, Malika Smaïl-Tabbone
article
International Journal of Metadata, Semantics and Ontologies, Inderscience, 2010, 5 (3), pp.184–193. ⟨10.1504/IJMSO.2010.034043⟩
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Journal articles
titre
Using Domain Knowledge to Guide Lattice-based Complex Data Exploration
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
19th European Conference on Artificial Intelligence – ECAI 2010, Aug 2010, Lisbon, Portugal. pp.847–852, ⟨10.3233/978-1-60750-606-5-847⟩
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Conference papers
titre
Connaissances de domaine et treillis de concepts pour l’exploration progressive de données complexes
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
21es Journées francophones d’Ingénierie des Connaissances – IC 2010, Jun 2010, Nîmes, France. pp.233 – 244
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Conference papers
titre
Gene-Disease Relationship Discovery based on Model-driven Data Integration and Database View Definition
auteur
Saliha Yilmaz, Philippe Jonveaux, Cedric Bicep, Laurent Pierron, Malika Smaïl-Tabbone, Marie-Dominique Devignes
article
Bioinformatics, Oxford University Press (OUP), 2009, 25 (2), pp.230 – 236. ⟨10.1093/bioinformatics/btn612⟩
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Journal articles
titre
A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening
auteur
Léo Ghemtio, Malika Smail-Tabbone, Marie-Dominique Devignes, Michel Souchet, Bernard Maigret
article
KDIR – International Conference on Knowledge Discovery and Information Retrieval, Oct 2009, Madeira, Portugal
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Conference papers
titre
Analyse de données transcriptomiques: Modélisation floue de profils d’expression différentielle et analyse fonctionnelle.
auteur
Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, O. Poch, Amedeo Napoli, N. Nguyen N.-H, W. Raffelsberger
article
Actes du XXVIIième congrès Informatique des Organisations et Systèmes d’information et de décision – INFORSID 2009, IRIT-Toulouse, May 2009, Toulouse, France. pp.413-428
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Conference papers
titre
Maîtriser les ressources numériques : biologie « in silico
auteur
Marie-Dominique Devignes, Malika Smaïl-Tabbone
article
Magali Roux. Biologie L’ère numérique, CNRS Editions, pp.189-222, 2009, 9782271067791
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Book sections
titre
Multiple-step virtual screening using VSM-G: overview and validation of fast geometrical matching enrichment.
auteur
Alexandre Beautrait, Vincent Leroux, Matthieu Chavent, Léo Ghemtio, Marie-Dominique Devignes, Malika Smail-Tabbone, Wensheng Cai, Xuegang Shao, Gilles Moreau, Peter Bladon, Jianhua Yao, Bernard Maigret
article
Journal of Molecular Modeling, Springer Verlag (Germany), 2008, 14 (2), pp.135-148. ⟨10.1007/s00894-007-0257-9⟩
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Journal articles
titre
Ontology-guided data preparation for discovering genotype-phenotype relationships
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
article
BMC Bioinformatics, BioMed Central, 2008, 9 (Suppl 4), pp.S3
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Journal articles
titre
BioRegistry: Automatic Extraction of Metadata for Biological Database Retrieval and Discovery
auteur
Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Amedeo Napoli, Malika Smail-Tabbone
article
1st international workshop on Ressource Discovery (RED), Joint to iiWAS 2008, Nov 2008, Linz, Austria
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Conference papers
titre
Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
18th European Conference in Artificial Intelligence – ECAI 2008, Jul 2008, Patras, Greece. pp.127-131
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Conference papers
titre
Extending Attribute Dependencies for Lattice-Based Querying and Navigation
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
16th International Conference on Conceptual Structures – ICCS 2008, Jul 2008, Toulouse, France. pp.189-202, ⟨10.1007/978-3-540-70596-3_13⟩
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Conference papers
titre
Model-driven data integration for mining protein-ligand and protein-protein interactions in a drug design context.
auteur
Leo Ghemtio, Emmanuel Bresso, Michel Souchet, Bernard Maigret, Malika Smaïl-Tabbone, Marie-Dominique Devignes
article
Journées Ouvertes Biologie Informatique Mathématiques – JOBIM 2008, Jun 2008, Lille, France
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Conference papers
titre
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics
auteur
Adrien Coulet, Malika Smail-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
article
21st International Workshop on Description Logics – DL2008, May 2008, Dresden, Germany
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Conference papers
titre
Correction et complétude d’un algorithme de recherche d’information par treillis de concepts
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
Revue des Nouvelles Technologies de l’Information, Hermann, 2007
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Journal articles
titre
Workshop PC Chairs’ Message. Web Data Integration for Mining in the Life Sciences (WebDIM4LS)
auteur
Marie-Dominique Devignes, Malika Smaïl-Tabbone
article
International Workshops on Web Information Systems Engineering – WISE 2007 Workshops, Dec 2007, Nancy, France. pp.3-4, ⟨10.1007/978-3-540-77010-7_1⟩
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Conference papers
titre
Traitement d’attributs inter-dépendants pour la recherche d’information par treillis
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
18es Journées Francophones d’Ingénierie des Connaissances – IC 2007, Jul 2007, Grenoble, France. pp.109-120
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Conference papers
titre
Ontology-guided Data Preparation for Discovering Genotype-Phenotype Relationships
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
article
Network Tools and Applications in Biology: A Semantic Web for Bioinformatics – NETTAB 2007, Jun 2007, Pisa, Italy
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Conference papers
titre
Effects of PPAR and RXR ligands in semaphorin 6B gene expression of human MCF-7 breast cancer cells.
auteur
Hossam Murad, Philippe Collet, Cecile Huin-Schohn, Nehmann Al-Makdissy, Geraldine Kerjan, Alain Chedotal, Mireille Donner, Marie-Dominique Devignes, Philippe Becuwe, Hervé Schohn, Lionel Domenjoud, Michel Dauça
article
International Journal of Oncology, Spandidos Publications, 2006, 28, pp.977-984
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Journal articles
titre
A transgenic mouse model engineered to investigate human brain-derived neurotrophic factor in vivo
auteur
Fabrice Guillemot, Italina Cerutti, Charles Auffray, Marie-Dominique Devignes
article
Transgenic research., SpringerLink, 2006
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Journal articles
titre
Treillis de concepts et ontologies pour interroger l’annuaire de sources de données biologiques BioRegistry
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
Revue des Sciences et Technologies de l’Information – Série ISI : Ingénierie des Systèmes d’Information, Lavoisier, 2006, Systèmes d’information spécialisés, 11 (1), pp.39-60
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Journal articles
titre
Immunoselection and characterization of a human genomic PPAR binding fragment located within POTE genes
auteur
Hossam Murad, Philippe Collet, Emilie Brunner, Hervé Schohn, Philippe Becuwe, Marie-Dominique Devignes, Michel Dauça, Lionel Domenjoud
article
Biochimie, Elsevier, 2006
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Journal articles
titre
BR-Explorer: An FCA-based algorithm for Information Retrieval
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
Fourth International Conference On Concept Lattices and Their Applications – CLA 2006, Oct 2006, Hammamet/Tunisia
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Conference papers
titre
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes
article
Proceedings of International Workshop on Knowledge Systems in Bioinformatics – KSinBIT’06, Oct 2006, Montpellier, France
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Conference papers
titre
SNP-Ontology for semantic integration of genomic variation data
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
article
14th Annual International Conference on Intelligent Systems for Molecular Biology – ISMB’06, Aug 2006, Fortaleza/Brésil
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Conference papers
titre
SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
article
3rd International Workshop on Data Integration in the Life Sciences 2006 – DILS’06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK
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Conference papers
titre
Ontology-driven Data Integration for Pharmacogenomics: Application to Genome Variations
auteur
Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes
article
Journées Ouvertes : Biologie, Informatique et Mathématiques – JOBIM’06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France
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Conference papers
titre
BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster)
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
4th International Conference on Formal Concept Analysis – ICFCA 2006, Feb 2006, Dresden/Germany
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Conference papers
titre
Classification et interrogation de sources de données biologiques
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
Revue des Nouvelles Technologies de l’Information, Hermann, 2005, Extraction des connaissances : Etat et perspectives, pp.43-47
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Journal articles
titre
User-designed web services to support heterogeneous biological data retrieval
auteur
Marie-Dominique Devignes, Hervé de Palma, Laurent Pierron, Lionel Domenjoud, Malika Smaïl-Tabbone
article
First International Workshop on workflows management: new abilities for the biological information overflow – NETTAB 2005, Oct 2005, Naples, Italy, pp.27-34
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Conference papers
titre
BioRegistry : a structured metadata repository for bioinformatic databases
auteur
Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes
article
First International Symposium on Computational Life Science – CompLife 2005, Sep 2005, Konstanz, Germany, pp.46-56
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Conference papers
titre
Querying a Bioinformatic Data Sources Registry with Concept Lattices
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
3th International Conference on Conceptual Structures – ICCS 2005, Jun 2005, Kassel, Germany. pp.323-336, ⟨10.1007/11524564_22⟩
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Conference papers
titre
Treillis de concepts et ontologies pour l’interrogation d’un annuaire de sources de données biologiques (BioRegistry)
auteur
Nizar Messai, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli
article
Actes du XXIIIème congrès Informatique des Organisations et Systèmes d’information et de décision – INFORSID 2005, May 2005, Grenoble/France
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Conference papers
titre
Extraction de données pharmacogénomiques à partir d’études cliniques : problématique
auteur
Adrien Coulet, Marie-Dominique Devignes, Malika Smaïl-Tabbone
article
Deuxième atelier sur la « Fouille de données complexes dans un processus d’extraction des connaissances », Jan 2005, Paris/France
typdoc
Conference papers
titre
Méthode sémantique pour la classification et l’interrogation de sources de données biologiques
auteur
Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone
article
EGC 2005 – Atelier Modélisation des Connaissances, Jan 2005, Paris
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Conference papers
titre
Alternative usage of 5′ exons in the chicken nerve growth factor gene: refined characterization of a weakly expressed gene
auteur
Odile Bertaux, Esther Toselli-Mollereau, Charles Auffray, Marie-Dominique Devignes
article
Gene, Elsevier, 2004, 334, pp.83-97
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Journal articles
titre
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
auteur
Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O’Donovan, Satoshi Fukuchi, O. Koyanagi Kanako, A. Barrero Roberto, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino, Kei Yura, Satoru Miyazaki, Kazuho Ikeo, Keiichi Homma, Arek Kasprzyk, Tetsuo Nishikawa, Mika Hirakawa, Jean Thierry-Mieg, Danielle Thierry-Mieg, Jennifer Ashurst, Libin Jia, Mitsuteru Nakao, A. Thomas, Michael, Nicola Mulder, Youla Karavidopoulou, Lihua Jin, Sangsoo Kim, Tomohiro Yasuda, Boris Lenhard, Eric Eveno, Yoshiyuki Suzuki, Jun-Ichi Takeda, Craig Gough, Phillip Hilton, Yasuyuki Fujii, Hiroaki Sakai, Susumu Tanaka, Clara Amid, Matthew Bellgard,, Maria de Fatima Bonaldo, Hidemasa Bono, K. Bromberg Susan, J. Brookes Anthony, Elspeth Bruford, Piero Carninci, Claude Chelala, Christine Couillault, J. de Souza Sandro, Marie-Anne Debily, Marie-Dominique Devignes, Inna Dubchak, Toshinori Endo, Anne Estreicher, Eduardo Eyras, Kaoru Fukami-Kobayashi, R. Gopinath Gopal, Esther Graudens, Yoonsoo Hahn, Ze-Guang Han, Michael Han, Kousuke Hanada, Hideki Hanaoka, Erimi Harada, Katsuyuki Hashimoto, Chisato Yamasaki, Ursula Hinz, Momoki Hirai, Teruyoshi Hishiki, Ian Hopkinson, Sandrine Imbeaud, Hidetoshi Inoko, Alexander Kanapin, Yayoi Kaneko, Takeya Kasukawa, Janet Kelso, Paul Kersey, Reiko Kikuno, Kouichi Kimura, Bernhard Korn, Vladimir Kuryshev, Izabela Makalowska, Takashi Makino, Shuhei Mano, Regine Mariage-Samson, Jun Mashima, Hideo Matsuda, Hans-Werner Mewes, Shinsei Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, Osamu Ogasawara, Osamu Ohara, Masafumi Ohtsubo, Norihiro Okada, Toshihisa Okido, Satoshi Oota, Motonori Ota, Toshio Ota, Tetsuji Otsuki, Dominique Piatier-Tonneau, Annemarie Poustka, Shuang-Xi Ren, Naruya Saitou, Katsunaga Sakai, Shigetaka Sakamoto, Ryuichi Sakate, Ingo Schupp, Florence Servant, Stephen Sherry, Rie Shiba, Sumio Sugano
article
PLoS Biology, Public Library of Science, 2004, 2 (6), pp.856-875
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Journal articles
titre
The human Semaphorin 6B gene is down regulated by PPARs
auteur
Philippe Collet, Lionel Domenjoud, Marie-Dominique Devignes, Hossam Murad, Hervé Schohn, Michel Dauça
article
Genomics, Elsevier, 2004, 83 (6), pp.1141-1150
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Journal articles
titre
Intelligent access to genomic sources on the web
auteur
Marie-Dominique Devignes, Nizar Messai, Amedeo Napoli, Shazia Osman, Malika Smaïl-Tabbone
article
W3C Workshop on Semantic Web for Life Sciences, Oct 2004, Cambridge, Massachusetts USA
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Conference papers
titre
Integration of biological data from web resources : management of multiple answers through metadata retrieval
auteur
Marie-Dominique Devignes, Malika Smaïl-Tabbone
article
12th International Conference on Intelligent Systems for Molecular Biology – 3rd European Conference on Computational Biology – ISMB-ECCB 2004, 2004, Glasgow, Scotland, United Kingdom. pp.3
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Conference papers
titre
A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources
auteur
Marie-Dominique Devignes, Yvan Norsa, Malika Smaïl-Tabbone, Philippe Collet, Lionel Domenjoud, Michel Dauça
article
European Conference on Computational Biology – ECCB’03, Sep 2003, Paris, France. pp.2
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Conference papers
titre
Inconsistencies between maps of human chromosome 22 correlate with increased frequency of disease-related Loci
auteur
Claude Chelala, Marie-Dominique Devignes, Sandrine Imbeaud, Rima Zoorob, David Cox, Charles Auffray, Emmanuel Curis, Simone Benazeth
article
Journal of Biological Systems, World Scientific Publishing, 2002, 10, pp.303-317. ⟨10.1142/S0218339002000743⟩
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Journal articles
titre
Collecte et intégration de données biologiques hétérogènes sur le web : application dans le domaine de la cartographie du génome humain
auteur
Marie-Dominique Devignes, André Schaaff, Malika Smaïl
article
Revue des Sciences et Technologies de l’Information – Série ISI : Ingénierie des Systèmes d’Information, Lavoisier, 2002, 7 (1-2), pp.45-61
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Journal articles
titre
Characterization of tissue expression and full-length coding sequence of a novel human gene mapping at 3q12.1 and transcribed in oligodendrocytes.
auteur
Nicole-Adeline Fayein, Bernard Stankoff, Charles Auffray, Marie-Dominique Devignes
article
Gene, Elsevier, 2002, 289 (1-2), pp.119-129. ⟨10.1016/S0378-1119(02)00507-3⟩
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Journal articles
titre
Collecte de données biologiques à partir de sources multiples et hétérogènes. Vers une structure de médiation conviviale et orientée source
auteur
Marie-Dominique Devignes, Malika Smaïl, Nacer Boudjlida
article
Journées scientifiques sur le Web sémantique, J. Charlet, P. Laublet, C. Raynaud, Oct 2002, Paris, France, 5 p
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Conference papers
titre
From putative promoter sequence to genomic context : biological data collection on the web using a generic application (Xprom)
auteur
Marie-Dominique Devignes, Yvan Norsa, Malika Smaïl, Philippe Collet, Lionel Domenjoud
article
European Conference on Computational Biology – ECCB’2002. Session Posters, Sep 2002, Saarbrücken, Germany, 2 p
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Conference papers
titre
Refined localization of twenty-one genes in subregion p13.1 of human chromosome 1
auteur
Claude Chelala, Sandrine Imbeaud, Marie-Dominique Devignes, Rima Zoorob, Charles Auffray
article
Cytogenetics and Cell Genetics, S Karger AG, 2001, 92 (3-4), pp.209-212. ⟨10.1159/000056904⟩
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Journal articles
titre
Services for a Genomics Open Distributed Environment
auteur
Nacer Boudjlida, Malika Smaïl-Tabbone, Marie-Dominique Devignes
article
XEWA’2000: IEEE Workshop on XML-Enabled Wide Area Search in Bioinformatics, 2000, League City, Texas, 2 p
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Conference papers
titre
The Genexpress IMAGE Knowledge base of human brain transcriptome : a prototype of integrated resource for functional and computational genomics
auteur
Geneviève Pietu, Régine Mariage-Samson, Nicole Fayein, Christiane Matingou, Eric Eveno, Rémi Houlgatte, Charles Decraene, Yves Vandenbrouck, Fariza Tahi, Marie-Dominique Devignes, Utte Wirkner, Wilhelm Ansorge, David Cox, Takahiro Nagase, Nobuo Nomura, Charles Auffray
article
Genome Research, Cold Spring Harbor Laboratory Press, 1999, 9 (2), pp.195-209
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Journal articles
titre
The Genexpress IMAGE Knowledge Base of the Human Muscle Transcriptome: A Resource of Structural, Functional, and Positional Candidate Genes for Muscle Physiology and Pathologies
auteur
G. Pietu, Eric Eveno, Béatrice Soury-Segurens, Nicole-Adeline Fayein, Régine Mariage-Samson, Christiane Matingou, Elisabeth Leroy, Claude Dechesne, Sabine Krieger, Wilhelm Ansorge, Isabelle Reguigne-Arnould, David Cox, Anindya Dehejia, Mihael H. Poulimeropoulos, Marie-Dominique Devignes, Charles Auffray
article
Genome Research, Cold Spring Harbor Laboratory Press, 1999, 9 (12), pp.1313-1320. ⟨10.1101/gr.9.12.1313⟩
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Journal articles
titre
Detailed transcript map of a 810-kb region at 11p14 involving identification of 10 novel human 3′ exons
auteur
Fabrice Guillemot, Charles Auffray, Marie-Dominique Devignes
article
European Journal of Human Genetics, Nature Publishing Group, 1999, 7 (4), pp.487-495
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Journal articles
titre
Querying Heterogeneous Databases : a user oriented system for collecting and structuring genome information
auteur
Marie-Dominique Devignes, André Schaaff, Malika Smaïl
article
Intelligent Systems for Molecular Biology 1999 – ISMB’99, 1999, Heidelberg, Germany, pp.30
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Conference papers